Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01236 ATGCCTTACACGGTCCGCGAGAACCTTTCGATCGGGAACATCGGCGACGCGGCGGAGATTCTCGAAAACGGCGCCGTCCAGAGCGTGACACACATCCTCTCCGTCCTCAGCTCCGCCTCCATCTCCTTCTTCTCCGAATGGAAAACCACTCTCTCCATCCCCGCCAAGGAGATCACCAAAGTCCACGCGGCGGACGCCGCCGCCAAATCGGCGCTCCCGCCGGAGAAGCTCCTCTACTCTCTCGAGTACGCCGGCCGCGACCTCAAGCTCGTGCGCATGGCCGTGCCTCTCAGAGACACCGAGAAGGAGGACCTGCTCGATTACTTGGAAGCCTGCATCGATTTCATTGATCGCGGTCGGAAGGAAGGTTCCGTTCTCGTTCACTGTTTTGCCGGAGTTTCCAGAAGTGCGGCGGTTATTACGGCGTATTTGATGAGAACCGAACGTCTATCTGTAGAAGATGCCCTTGAATCGTTGAGGCAGAGCTGTGAATtTGTTTGTCCCAATGATGGTTTTTTAGAGCAGTTGAAAATGTTCGAGGGGATGGGTTTTAAGGTTGATCACTCCAGCCCTATATACAAGCGCTTTCGTCTAAAATTACTATATGAGAATCATTTCTCAGGGTTGAGGATAGACAGTTCTAAACTTGGTGCAGATCCTGGTATGCCTGTTGAAGTTTCTTCAGAGGCAGAAGAAACTACTAAAGTAGGAAATAATCGTAGGCCTACATATCGCTGTAAGAAGTGTCGACGACTTGTTGCATTGCAAGAACATGTCATAGACCATGTTCCTGGTGAGGGTGAGAGAGCCTTTGAGTTCCACAAACGGAGAGGTGGCAACCCTTTCAACAAATCTGATGAATTTGAGTGTTCATCCATATTTATTGAGCCTCTACGGTGGATGAAAGCTGTTGAGGAAGGTGCAATGGAGGGAAAACTGTCCTGTGCACATTGTGATGCCCGTTTGGGATACTTCAATTGGTCAGGCATACAATGCAGCTGTGGAAGCTGGATCACTCCAGCTTTTCAACTCCACAAAGGCCGGATAGACATAAGCCCCATGTAA 1065 0.5023 MPYTVRENLSIGNIGDAAEILENGAVQSVTHILSVLSSASISFFSEWKTTLSIPAKEITKVHAADAAAKSALPPEKLLYSLEYAGRDLKLVRMAVPLRDTEKEDLLDYLEACIDFIDRGRKEGSVLVHCFAGVSRSAAVITAYLMRTERLSVEDALESLRQSCEFVCPNDGFLEQLKMFEGMGFKVDHSSPIYKRFRLKLLYENHFSGLRIDSSKLGADPGMPVEVSSEAEETTKVGNNRRPTYRCKKCRRLVALQEHVIDHVPGEGERAFEFHKRRGGNPFNKSDEFECSSIFIEPLRWMKAVEEGAMEGKLSCAHCDARLGYFNWSGIQCSCGSWITPAFQLHKGRIDISPM 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01236 354 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 350 - -
Gma19g01236 354 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 88 183 IPR029021 -
Gma19g01236 354 Gene3D Protein tyrosine phosphatase superfamily 4 202 IPR029021 -
Gma19g01236 354 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 161 IPR000387 GO:0016311|GO:0016791
Gma19g01236 354 SMART dsp_5 1 182 IPR020422 GO:0006470|GO:0008138
Gma19g01236 354 Pfam Dual specificity phosphatase, catalytic domain 91 180 IPR000340 GO:0008138|GO:0016311
Gma19g01236 354 CDD DSP_DUSP12 5 187 - -
Gma19g01236 354 PIRSF DUSP12 4 72 IPR016278 GO:0006470|GO:0008138
Gma19g01236 354 PIRSF DUSP12 85 354 IPR016278 GO:0006470|GO:0008138
Gma19g01236 354 ProSitePatterns Tyrosine specific protein phosphatases active site. 127 137 IPR016130 GO:0016311|GO:0016791
Gma19g01236 354 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 185 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01236 Gma-Chr19 41245654 41250176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01236 90 180 Protein tyrosine phosphatase (PTP) family AT3G06110 38.043 1.20e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01236 K14819 - gmx:100804683 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01236 19 41245654 41250176 Gma19g01236 19 41245654 41250176 ECH
Gma19g01236 19 41245654 41250176 Gma03g01178 03 37435646 37439621 GST