Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01233 ATGCACCACCCCCTCTCTACTAATTCCTCCAATAATACTAATTACTACCCCTTCCACCTCTCCCAAATTACCGAAACACCCTCCCACCATGATAGAGCCCTTGCTGCCATGAAGAACCACAAGGAGGCTGAGAAGAGAAGGAGGGAGAGAATCAACTCCCACCTCGACCACCTTCGCACTCTTCTCCCTTGTAATTCCAAGACAGACAAGGCTTCGCTTCTGGCGAAGGTTGTCCAGCGGGTGAAGGAGTTGAAGCAGCAAACCTCGGAGATTACCGAGCTTGAAACCGTTCCGTCGGAGACCGACGAGATCACGGTGCTCTCCACCACCGGAGGCGACTACGCCTCCGGTGGCGGCGACGGAAGGCTCATCTTCAAGGCCTCGCTGTGCTGCGAGGACCGCTCCGACCTCATCCCCGACCTCATAGAAATCCTCAATTCGCTTCACCTCAAAACCCTCAAAGCAGAAATGGCCACTCTCGGAGGAAGAACACGCAACGTTCTCGTGGTCGCTGCTGACAAAGAACACAGCATTGAATCCATCCATTTCCTTCAGAACTCGCTCAGGTCCATTCTGGACCGATCCAGTTCCGGCGACAGGTCGAAACGACGCCGTGGCTTAGACCGAAGACTGATGTCTTGA 642 0.5436 MHHPLSTNSSNNTNYYPFHLSQITETPSHHDRALAAMKNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTTGGDYASGGGDGRLIFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESIHFLQNSLRSILDRSSSGDRSKRRRGLDRRLMS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01233 213 Pfam Helix-loop-helix DNA-binding domain 39 84 IPR011598 GO:0046983
Gma19g01233 213 CDD bHLH_AtAIG1_like 31 106 - -
Gma19g01233 213 Gene3D - 30 96 IPR036638 GO:0046983
Gma19g01233 213 PANTHER TRANSCRIPTION FACTOR BHLH30 9 212 IPR045847 GO:0003700|GO:0006355
Gma19g01233 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 84 IPR011598 GO:0046983
Gma19g01233 213 SMART finulus 41 90 IPR011598 GO:0046983
Gma19g01233 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 95 IPR036638 GO:0046983
Gma19g01233 213 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 9 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01233 Gma-Chr19 41191892 41193548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01233 15 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 68.649 8.08e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma19g01233 HLH 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01233 - K22484 gmx:100802566 355.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01233 19 41191892 41193548 Gma19g01233 19 41191892 41193548 ECH
Gma19g01233 19 41191892 41193548 Gma03g01177 03 37406729 37408410 GST
Gma19g01233 19 41191892 41193548 Gma02g01500 02 27127475 27129249 PCT
Gma02g01500 02 27127475 27129249 Gma19g01233 19 41191892 41193548 PCT