Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01217 ATGCCTTCGAATTCAAAGCAGAAAAAGAAGCAATCCAAGCTTTTGCAGCAGTCATCATTGTCCTCCAATGCCGCCACCACGCCTTCCAAAACGCTCCAACCTTCTGAACTTGCCTCCTTGTGCGAAGAAGCTTCTCGAAAGTTCCCTTCTCTCATCGCTAAATCCGCGTTCATCGCCGAACTCGCCCAGGTCGACGACACTGTTCCCGTTTCTAACAGAATTTGGCTCTCCGCACCTTCCATGCTCTCCCTCTCTCTCCCCCCCGGTTCCACAGTCTCGGTGTCTATTCCATCTTCGGGGGAGAAAATTTCGCAATTGCATAGCTTTCCTCTCGCATCGTTAGCTAATGAATGTGAAAAACTCTATGGATTGGAAAGTAGCAAGGCGTTGGATGATTATGCGGGAAACTACTTGGTACTTGCAACCGTGTTTCCTTCTAGTAAGGTTTTGAAGAATGGAGTACGCCTGTCTTCAAACCTTTATCATGCCATGGGATGTCCTGCTTTGGGCACAAGTGTGTTTGTTCATCCAATATCTAGTGCTGCAAATGGGATCAATGAACAACATTCTACAGGAAATAGTTGTCTGTCTATATATAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAGAATGGTCTACCATTGAAATTTAATAACTTTCCCTCATTGGGTGTGTCTAAGGTGAAATTTCATGTCCAATCTGAGAATGATATTGTTGCATCTCCTGCAACACCTTCGAATGGATCAAAGTTTTCTAATGCTTGTGGGATGTCTTCTCCACTGTTTGACAATTCAGCATCTAGTCTGCCAAATCAGAATAGTCAATCATTGAATTCATTTGATGTTAGCTTAGCATTAGGGAATGAAAGTTCTAAAGAATTACTACTGACGGGGAATCTTGTCAATGTCCCAATGTTATCAGAGTTGTGCTTTTTCCAAGTTATAGGTGCTATGAAGCAGCCAGTTACCAAATCTGATCATTATCCATCAAATGGAAACGGTGATTTATATCCTGAGGATTCTGATATAGCAGATAGTGGAAATCAGGCTTTCACTGTTAATGATGAAACAAAGGTGTTTTTATCTCTGCCATCAAATGCCGCATCTGAAGAGCCAATTCAAAGGGATATACCTTGTGTGAAACTAGAAAGCAAAGACATAATTTCTTCGTCAGTGAGCGATGCTTTGTCAAGTTTTGGTTTAAGAACCACGAGAGGTGTTCTTCTTCATGGTCCACCTGGTACAGGAAAGACTTCCCTGGCTCAATTATGTGCTCATGAAGTTGGAGTCAAAATTTTCCCAATAAATGGACCTGAAATTGTTACCCATTATTATGGGGAAAGTGAGCAACAATTGCATGAAGTTTTTGATTCAGCCATTCAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGATGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCAACTTTATTAAATCTGATGGATGGAATTAGTAGAAGTGAAGGGTTACTTGTAATTGCCGCCACTAACCGGCCTGACCATATTGAGCCAGCTCTCAGACGACCAGGAAGATTTGACAAGGAAATTGAAATTGGTGTGCCATCACCCGACCAACGTTCGGATATTTTGCTCACTCTTCTCAGTGAAATGGATCACACTCTCTCTGAGTTTCAAATTGAACACCTTGGCACCGCCACTCATGGTTTTGTGGGTGCTGATCTAGCTGCACTTTGCAATGAGGCAGCCTTGATTTGTCTAAGGCATTATGCCAATTTTAAGAAGACTTATGGTTCTTGTTCTGATTATATAACAGAGCAACCTGCTCTGATGAATAGTGCAACAAACTCAAGAGATCATTCGGGTGATGCAATTTCATCTGTTTCAGATATGTCAGTGGCCTCCAGTCGTGTGTTACCTTCCTCCAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTGGATGGTCTACATCAAAGAGTTAATGTCACTGTCATAGCTGCTACAAATAGGCCAGACAAGATAGACCCTGCCCTTTTAAGGCCAGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCAAATGAGGTGGACAGGGAAGAGATATTTCGCATACATCTGTGTAAAATCCCGTGTGATTCTGATGTTAGCCTTAAAGAACTTGCTCGACTCACAGATGGTTGTACAGGGGCTGACATATCATTGATATGTCGGGAGGCAGCTGTTGCAGCAATTGAGGAGAGACTTGATGCTTCAGTTATAACAATGGAGCATTTAAAGATGGCAATCAAACAGATCCAGCCATCAGAAGTTCACTCCTACCCAAAGCTGTCAACAAAATTTCAAAGGGCAGTCCACTGCTGTGATATAAAGGATGAATTCAATGATATGCAGTGCGACAGTAGATCTACTCAGTTCAACATTTGGAAGTTCATAAAATCTTGCACATCGTTCCTCTATCAGATTCCATTTGTCATCTTTAATTTGAGAACTGCTCAAAGTAGTTAA 2568 0.4221 MPSNSKQKKKQSKLLQQSSLSSNAATTPSKTLQPSELASLCEEASRKFPSLIAKSAFIAELAQVDDTVPVSNRIWLSAPSMLSLSLPPGSTVSVSIPSSGEKISQLHSFPLASLANECEKLYGLESSKALDDYAGNYLVLATVFPSSKVLKNGVRLSSNLYHAMGCPALGTSVFVHPISSAANGINEQHSTGNSCLSIYNCKELYLQLVPSKNGLPLKFNNFPSLGVSKVKFHVQSENDIVASPATPSNGSKFSNACGMSSPLFDNSASSLPNQNSQSLNSFDVSLALGNESSKELLLTGNLVNVPMLSELCFFQVIGAMKQPVTKSDHYPSNGNGDLYPEDSDIADSGNQAFTVNDETKVFLSLPSNAASEEPIQRDIPCVKLESKDIISSSVSDALSSFGLRTTRGVLLHGPPGTGKTSLAQLCAHEVGVKIFPINGPEIVTHYYGESEQQLHEVFDSAIQAAPAVVFIDELDAIAPARKDGGEELSQRLVATLLNLMDGISRSEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPDQRSDILLTLLSEMDHTLSEFQIEHLGTATHGFVGADLAALCNEAALICLRHYANFKKTYGSCSDYITEQPALMNSATNSRDHSGDAISSVSDMSVASSRVLPSSSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEVDREEIFRIHLCKIPCDSDVSLKELARLTDGCTGADISLICREAAVAAIEERLDASVITMEHLKMAIKQIQPSEVHSYPKLSTKFQRAVHCCDIKDEFNDMQCDSRSTQFNIWKFIKSCTSFLYQIPFVIFNLRTAQSS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01217 855 PANTHER AAA-FAMILY ATPASE 72 367 - -
Gma19g01217 855 ProSitePatterns AAA-protein family signature. 683 701 IPR003960 GO:0005524|GO:0016887
Gma19g01217 855 PANTHER AAA-FAMILY ATPASE 385 635 - -
Gma19g01217 855 PANTHER AAA-FAMILY ATPASE 648 811 - -
Gma19g01217 855 MobiDBLite consensus disorder prediction 1 33 - -
Gma19g01217 855 SMART AAA_5 405 541 IPR003593 -
Gma19g01217 855 Gene3D - 647 712 IPR027417 -
Gma19g01217 855 Gene3D - 539 646 - -
Gma19g01217 855 Gene3D - 381 538 IPR027417 -
Gma19g01217 855 Pfam AAA+ lid domain 564 594 IPR041569 -
Gma19g01217 855 Pfam AAA+ lid domain 735 780 IPR041569 -
Gma19g01217 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 595 IPR027417 -
Gma19g01217 855 CDD AAA 403 538 - -
Gma19g01217 855 Pfam ATPase family associated with various cellular activities (AAA) 652 712 IPR003959 GO:0005524|GO:0016887
Gma19g01217 855 Pfam ATPase family associated with various cellular activities (AAA) 409 538 IPR003959 GO:0005524|GO:0016887
Gma19g01217 855 PANTHER - 385 635 - -
Gma19g01217 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 793 IPR027417 -
Gma19g01217 855 CDD AAA 662 713 - -
Gma19g01217 855 Gene3D - 714 795 - -
Gma19g01217 855 PANTHER - 72 367 - -
Gma19g01217 855 PANTHER - 648 811 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01217 Gma-Chr19 40939843 40945580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01217 648 841 Calmodulin-binding Proteins AT3G56690 67.526 9.43e-73 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01217 - - gmx:100788600 1056.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01217 19 40939843 40945580 Gma19g01217 19 40939843 40945580 ECH
Gma19g01217 19 40939843 40945580 Gma03g01160 03 37053490 37060737 GST