Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01216 ATGAGGGAAGACGATTCGAATTGGTTTTCGCGATGGGAAGAGGAACTTCCGTCTCCGGAAGAACTCATGCCTCTATCGCAAACCCTAATTACTCCCGATCTAGCCATGGCCTTCGACATCCGAAACCCTCACACCTCCAACACCGCACAGAATCAACACCACCACCACCACCAAAACCAACAACCACCGCAACTACAACAACCTTCGAACCCTTCCTCGCTCCCTAACCCGCAACAGCAGCAGCAGCAGCAACAACAACAACAACAACAACCCACCTCCGCCGAGTTCGCCGACTCCGGTGAACTCGGCTCCGGCACCGCCGGCGAGGAGCCGGCGCGTACCCTAAAACGGCCCCGCCTCGTGTGGACCCCACAGCTCCACAAGCGCTTCGTCGACGCCGTCGCTCACCTCGGCATCAAAAACGCCGTTCCCAAGACGATAATGCAGCTCATGAGCGTCGACGGTTTGACCCGCGAAAACGTCGCTAGTCACTTGCAGAAGTACCGTCTTTACCTCAAGCGCATGCAGGGGATATCCGCCGCCGGTCCTGGCGGCGCCTCCGGTGCCGTCGCCGACCCCGCCACCGACCACTTGTTCGCCAGCTCGCCGGTGCCGGCGCATTTCTTGCACCCGGCCGCGAGGCCGAATTCGGATCATTTCCTGCCGTTCGTGCCGGCGCTCCACCACCACCAACAGCAGCAGCAGATGGCGGCCGCGGCGCAGTACCACCGGCAGGTGGGGCATTTCGGGTCGCCGCCGAACGGGCACTTCGAGAACCCGTTTATGTCTAGGCCGAATCTTCAGAGGATGGGGGGTGGTGGTGGTCCTGTGCACAACAACCACCACCCTGTGAGTGGTTATGTGGAGGACATGGAGTCTGCTAATGCTGCCTCTGGAGATTCAAAAGCTACAGAAGTCATGATGGATAAAGTTCTGGTGGATTTGGATGGTTTCGTGGCGTTGGGGCTTCCTCTAATTTTCTGGGGATTGGTCATGACTGGATGGAATCTTGGGGGGTCACAGATTGGGAGGTTTTGTGTCAGTATTCATGGAGGGGGTGGCAAAAGCCGCCAATTTGACTTGTCGCCTTGTTGTCGAGTTTTTTGTCGTGTGGAGAGATTTGTGTCATTTACTCTTGGAACCAGACTTCCATCGCCCATGTATATCTATCAAGGAGAAGACGTGTTGTTGATACAAGATATAGCAAACTAA 1212 0.5644 MREDDSNWFSRWEEELPSPEELMPLSQTLITPDLAMAFDIRNPHTSNTAQNQHHHHHQNQQPPQLQQPSNPSSLPNPQQQQQQQQQQQQQPTSAEFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGPGGASGAVADPATDHLFASSPVPAHFLHPAARPNSDHFLPFVPALHHHQQQQQMAAAAQYHRQVGHFGSPPNGHFENPFMSRPNLQRMGGGGGPVHNNHHPVSGYVEDMESANAASGDSKATEVMMDKVLVDLDGFVALGLPLIFWGLVMTGWNLGGSQIGRFCVSIHGGGGKSRQFDLSPCCRVFCRVERFVSFTLGTRLPSPMYIYQGEDVLLIQDIAN 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01216 403 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 118 170 IPR006447 GO:0003677
Gma19g01216 403 MobiDBLite consensus disorder prediction 1 116 - -
Gma19g01216 403 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 70 - -
Gma19g01216 403 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 79 296 - -
Gma19g01216 403 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 79 296 IPR044841 GO:0003700|GO:0006355
Gma19g01216 403 SUPERFAMILY Homeodomain-like 114 174 IPR009057 -
Gma19g01216 403 MobiDBLite consensus disorder prediction 41 99 - -
Gma19g01216 403 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 70 IPR044841 GO:0003700|GO:0006355
Gma19g01216 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 173 IPR017930 -
Gma19g01216 403 Gene3D - 114 176 - -
Gma19g01216 403 MobiDBLite consensus disorder prediction 1 18 - -
Gma19g01216 403 Pfam Myb-like DNA-binding domain 121 169 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01216 Gma-Chr19 40932975 40936108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01216 1 304 G2-like Transcription Factor Family AT3G10760 56.980 5.96e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gma19g01216 Myb_DNA-binding 3.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01216 - - gmx:100797237 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01216 19 40932975 40936108 Gma19g01216 19 40932975 40936108 ECH
Gma19g01216 19 40932975 40936108 Gma03g01159 03 37047989 37049568 GST