Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01187 ATGGGACGAGCCAGGCTTCTGGTTTCAGACTTCGTTCTGTCTTTCATGTGGGTATGGTCCGGTGTTCTCCTTCGGATCATCGTCTTCAACCACCTTGGCTTCGCTCATGGCCCCCTCGGTGAGGTTATCAAAACTACCTTCTCCATCGCCAACATGTTCTTCTTCGCCTTCCTCGTCAAGGTTACACGTGGCGGCGCCTACAACCCCCTCACCGTTCTGGCCGATGCTATCTCCAGGGATTTTAACAACTTCCTCTACTGCGCTGGTGCCAGAATCCCCACTCAGGTGGTTGGATCGATTGTTGGAGTTAAACTTCTTATTGATACCATTCCTGAAGTAGGACTGGGACCACGTCTGAATGTTGACATTCATCGGGGTGCGCTGACAGAAGGATTATTAACATTTGCAATTGTAACCATTTCACTTGGACTCGCCTCAAAAATCCGTGAAAATTTCTTCATGAAGACTTGGATCTCCAGCCTCTCCAAGTTAACACTTCATATACTTGGCTCTGATCTGACTGGTGGTTGCATGAACCCTGCATCTGTAATGGGATGGGCATATGCTCGAGGCGATCACATAACAAAGGAGCACTTCCTTGTATATTGGCTTGCTCCCATAGAAGCAACTATTTTAGCAGTGTGGACATTCAAATTTCTAGTGCAGCCTGGAAAAGAAGATAAATCAACCTCAAAAAGTAAATCGGATTGA 711 0.4684 MGRARLLVSDFVLSFMWVWSGVLLRIIVFNHLGFAHGPLGEVIKTTFSIANMFFFAFLVKVTRGGAYNPLTVLADAISRDFNNFLYCAGARIPTQVVGSIVGVKLLIDTIPEVGLGPRLNVDIHRGALTEGLLTFAIVTISLGLASKIRENFFMKTWISSLSKLTLHILGSDLTGGCMNPASVMGWAYARGDHITKEHFLVYWLAPIEATILAVWTFKFLVQPGKEDKSTSKSKSD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01187 236 Pfam Major intrinsic protein 5 216 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma19g01187 236 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma19g01187 236 PRINTS Major intrinsic protein family signature 87 106 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma19g01187 236 PRINTS Major intrinsic protein family signature 129 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma19g01187 236 PRINTS Major intrinsic protein family signature 160 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma19g01187 236 PRINTS Major intrinsic protein family signature 200 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gma19g01187 236 PANTHER AQUAPORIN SIP2-1-RELATED 1 236 - -
Gma19g01187 236 Gene3D Glycerol uptake facilitator protein. 3 236 IPR023271 -
Gma19g01187 236 PANTHER AQUAPORIN SIP2-1-RELATED 1 236 IPR044226 GO:0015267
Gma19g01187 236 SUPERFAMILY Aquaporin-like 4 230 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01187 Gma-Chr19 40525376 40527794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01187 1 236 Major Intrinsic Protein MIP AT3G56950 60.338 2.49e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01187 K09875 - gmx:100786138 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01187 19 40525376 40527794 Gma19g01187 19 40525376 40527794 ECH
Gma19g01187 19 40525376 40527794 Gma16g00395 16 4162553 4168794 GST