LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma19g01181	ATGGGGAGGAAGCGAAAGGTAGCACCGAAATCTTCTGTATCCGCCGAGCCCCCGCTGAAGCAACACCAACCAAAACCCGAAAATGCCGCTCAGGAATACgaagaagaggtcgaagaggaagttgaggaagaagaggtagaggaagaggtcgaagaggaagaagaagaagaggaggacgaagaggacgaggaagaagaagaagaagaCCAAAAAGACCAATACCAGCACCAACAACAACAGCAAGACGAAGACGACGACCCGATCTCCAAGCTTCTGGAACCGTTGAGCAAGGACCAGCTCCTCATCCTTCTCTGCGAGGCGGCGGCCAAGCACCAAGACGTGGCTGAGAGGATCCGAAGGGCGGCCGACGAGGATCCGGTGCACCGGAAGATATTTGTCCACGGATTGGGCTGGGACACAACCGCCGGAACCCTAATCAGTTCGTTCCGCCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATTCTCTTCAAGACCCGCCGCGGCGCGCGCAACGCCCTCAAGGAGCCGCAAAAGAAGATCGGCAACCGCATGACGGCGTGCCAGCTGGCATCCATCGGTCCGGTTAGCAACCCGCCGCAGACGGCACCGCCGGCGGTGGCGGCTCCGTCGTCGTCGGTTTCGGAGTACACACAGAAGAAGATCTACGTGAGCAACGTCGGTGCGGATCTGGATCCGCAGAAGCTTCTCGCGTTTTTCTCGCGGTTCGGGGAGATTGAGGAAGGGCCGTTGGGGCTTGACAAGGCTACCGGAAAACCTAAGGGGTTTTGTTTGTTTGTTTACAGGAGTCCAGAGAGTGCAAGGAGAGCATTGGAGGAGCCTCATAAGGATTTTGAAGGGCACATTTTGCATTGCCAGAAGGCGATTGATGGGCCCAAGGCCGGGAAGTTGCAGCAGCACGGGAATGTGAATGCCCAGGCGCAGCGGGCCCAGTTTCAGAGGAATGGTAGTGTTGGTACTAATGCTGCTGCTGGGTATGGTGGTGGTGCGGCGTTGCAGCCCGGGCACTTGATGGCCCCGGCTGGGCCGGGGATTGGGTTTAATCAGTCTGCTGCTGCTGCGCAGGCCGCACTGAATCCGGCAATGGCGCAGGCGTTGACCGCGCTGCTGGCATCGCAGGGGACGTTGGGGCTGACGAATTTGTTGGGGAGTATTGGAACGAGTGCTGCAGTTAACCCTGGTGTGCCTTCTGCAGGGGCTGCGGTGCAGGGTGGTTACAGTGCTCAACCGAATATAAGTCCCGGTGTTGTTGGAGGATATGGGAATCAGGTGGGGTTGCAGGTGGCGTATCCGAATCAGAATCAGAATCAGCAGATAGGGCAGGGTGGGTCCGGAAGAGGGCAATATGGTGGTGGATCTGCGCCCTACATGGGGCACTAG	1440	0.5431	MGRKRKVAPKSSVSAEPPLKQHQPKPENAAQEYEEEVEEEVEEEEVEEEVEEEEEEEEDEEDEEEEEEDQKDQYQHQQQQQDEDDDPISKLLEPLSKDQLLILLCEAAAKHQDVAERIRRAADEDPVHRKIFVHGLGWDTTAGTLISSFRQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKEPQKKIGNRMTACQLASIGPVSNPPQTAPPAVAAPSSSVSEYTQKKIYVSNVGADLDPQKLLAFFSRFGEIEEGPLGLDKATGKPKGFCLFVYRSPESARRALEEPHKDFEGHILHCQKAIDGPKAGKLQQHGNVNAQAQRAQFQRNGSVGTNAAAGYGGGAALQPGHLMAPAGPGIGFNQSAAAAQAALNPAMAQALTALLASQGTLGLTNLLGSIGTSAAVNPGVPSAGAAVQGGYSAQPNISPGVVGGYGNQVGLQVAYPNQNQNQQIGQGGSGRGQYGGGSAPYMGH	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma19g01181	479	MobiDBLite	consensus disorder prediction	455	479	-	-
	Gma19g01181	479	SUPERFAMILY	RNA-binding domain, RBD	219	319	IPR035979	GO:0003676
	Gma19g01181	479	SUPERFAMILY	RNA-binding domain, RBD	121	209	IPR035979	GO:0003676
	Gma19g01181	479	MobiDBLite	consensus disorder prediction	71	89	-	-
	Gma19g01181	479	MobiDBLite	consensus disorder prediction	1	89	-	-
	Gma19g01181	479	Gene3D	-	27	209	IPR012677	-
	Gma19g01181	479	MobiDBLite	consensus disorder prediction	32	70	-	-
	Gma19g01181	479	SMART	rrm1_1	130	202	IPR000504	GO:0003723
	Gma19g01181	479	SMART	rrm1_1	234	306	IPR000504	GO:0003723
	Gma19g01181	479	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	233	316	IPR000504	GO:0003723
	Gma19g01181	479	PANTHER	-	14	479	-	-
	Gma19g01181	479	Gene3D	-	220	350	IPR012677	-
	Gma19g01181	479	Coils	Coil	27	84	-	-
	Gma19g01181	479	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	131	197	IPR000504	GO:0003723
	Gma19g01181	479	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	235	302	IPR000504	GO:0003723
	Gma19g01181	479	PANTHER	GEO13361P1-RELATED	14	479	-	-
	Gma19g01181	479	CDD	RRM_RBM24_RBM38_like	233	308	-	-
	Gma19g01181	479	CDD	RRM_RBM24_RBM38_like	129	204	-	-
	Gma19g01181	479	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	129	206	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma19g01181	Gma-Chr19	40475232	40478831	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma19g01181	221	318	C2H2 Transcription Factor Family	AT2G19380	35.354	1.77e-10	61.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma19g01181	K12741		-	gmx:100784200	781.171