Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01144 ATGAGTTCTTCACAGCACTTGAACAATGTTGGTGAAGGTAGCAATAGAGACATGAGTTTCTTCCCTCCTTCTTCTCTTTATGTGGGTTCTTCACAAACTCCTCCTTTGTCTATGGGACATGAAAATGGGGTAGAGGGTTCAAAGCCTGAGATGGGTCTTCAGATTTTTGGGTCCACAGTGTTTCAGCCCTCGGAGTGCAGGGGAACAAAGAGAGCCAGTGATGAAGAAGGGGTTGAGATTGAGAACAGGAACTTGTGTTTAAAACTTGCTGATGAAGCACAAGCTAAGAGCTCTGCTTCAGGGAAAATCAAGCTTTGTGCTAGAGGTCATTGGAGGCCAGCTGAAGATGAAAGACTCAAGGAGCTTGTTGCTCAATATGGCCCTCAAAATTGGAACTTGATTGCTGAGAATTTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGGTGGTTTAACCAGCTAGATCCTAGGATCAACAGAAGGTCCTTTTCTGAGGAGGAAGAGGAGAGACTTATTACTGCACACAGAATGTATGGTAACAAATGGGCCATGATTGCAAGACTCTTCCCTGGAAGGACAGATAATGCAGTGAAGAACCACTGGCATGTGATCATGGCTAGGAGGCAGAGGGAGCACTCTAGCAGTGTGTATAGAAGGAGAAAACTTGTCGTTAATGAAACCCTTCCAAAGGGTTTGGATCTGACTCTGTCTAACAATGCAGGGAGTGAATCAACCATCTCAAGCACCATTGATGAATCTGCCTCAACTTGCACTAACCTCTCCCTAACTCCCTCCTCAGCCAAAGTTACCCCTCCTTTTCGAAGACTCTTTGACCATCCTGGTCCATCTCAGAATCACCAAGCCTTTGGATCATTAATTGGTATATGGCAAGCTAGAGGGGATGTGAGTTTTAACAAGTTTTGTGGTGCTTCTTGGAAAGGGGTAGCATATAAAAAGGCAGATCAAGTGGGAAAGCTTAAGGGTGTGGACCAGTCTAATTTTTCAGATGCAAATTCAGAAGTATCAGTATCTGAGTCAGTTGCCACCAATAGGTCCAATGTCTCAATTTCTGAAGAGAGTGAAACTGTGGGTGATAAGATTAACATGCCATTCATTGATTTTCTTGGAGTAGGAGCTACCTAG 1143 0.4392 MSSSQHLNNVGEGSNRDMSFFPPSSLYVGSSQTPPLSMGHENGVEGSKPEMGLQIFGSTVFQPSECRGTKRASDEEGVEIENRNLCLKLADEAQAKSSASGKIKLCARGHWRPAEDERLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPRINRRSFSEEEEERLITAHRMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRQREHSSSVYRRRKLVVNETLPKGLDLTLSNNAGSESTISSTIDESASTCTNLSLTPSSAKVTPPFRRLFDHPGPSQNHQAFGSLIGIWQARGDVSFNKFCGASWKGVAYKKADQVGKLKGVDQSNFSDANSEVSVSESVATNRSNVSISEESETVGDKINMPFIDFLGVGAT 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01144 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 154 IPR017930 -
Gma19g01144 380 PANTHER MYB PROTEIN-RELATED 68 380 - -
Gma19g01144 380 SMART sant 107 156 IPR001005 -
Gma19g01144 380 SMART sant 159 207 IPR001005 -
Gma19g01144 380 MobiDBLite consensus disorder prediction 1 48 - -
Gma19g01144 380 ProSiteProfiles Myb-like domain profile. 155 205 IPR001005 -
Gma19g01144 380 MobiDBLite consensus disorder prediction 1 38 - -
Gma19g01144 380 CDD SANT 171 202 IPR001005 -
Gma19g01144 380 Gene3D - 108 159 - -
Gma19g01144 380 Gene3D - 162 221 - -
Gma19g01144 380 PANTHER OS08G0435700 PROTEIN 68 380 - -
Gma19g01144 380 CDD SANT 111 152 IPR001005 -
Gma19g01144 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 209 IPR017930 -
Gma19g01144 380 SUPERFAMILY Homeodomain-like 108 201 IPR009057 -
Gma19g01144 380 ProSiteProfiles Myb-like domain profile. 108 154 IPR001005 -
Gma19g01144 380 Pfam Myb-like DNA-binding domain 108 154 IPR001005 -
Gma19g01144 380 Pfam Myb-like DNA-binding domain 160 203 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01144 Gma-Chr19 39952181 39953652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01144 105 232 MYB Transcription Factor Family AT1G26780 78.906 6.05e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma19g01144 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01144 K09422 - gmx:100791795 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01144 19 39952181 39953652 Gma19g01144 19 39952181 39953652 ECH