Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01071 ATGAATATGGATATGTGCCAAAATGTATCAGTTTCCGGTGAGTGCCAACAAGTGCAGGTTTTTGCCCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTTGAGTTGGAGTGGCTTTCAGAGTTTGTTGAAGACTGTTTTTCAAGCCCTCCAAGCTGTGTCTTGGTACCTATTGGTGTCAAGACTACAAGCACAAGCACCAACCTTTCTTCAGGCACATTGAAGAGACCCCAACAACAAAATGAGTCACCTTTGCAAAACTTTGCTGTGCCAGGGAAGGCAAGGAGCAAAAGGAAGAGGCTTTCAGCCCCAAGAACCAACAAAGACCCTCTAAACATATGGTCACACCATTTGAATCCTCAAAATGAGTCCTTGTGTTCTGACCCTCCTCTTCTCAAACAGGCTTATTGGTTAGCTGACAGTGAGCTCATCATGCCAAAGCCAAAGGATGAGGAGCAAGAAGAGGTGGTGACCAAAGAGGATGAAAAAGTGATTAATGTGATGAGCAAGGAAAGCTTTGGGGACTCTGAGCTTGAGGAGGGTAGCAATGGTCAACAACCAATGCCAACAAGGAGGTGCAGCCATTGCTTGGCTCAGAGGACCCCGCAGTGGAGGGCAGGACCATTAGGTCCAAAGACACTATGCAATGCATGTGGAGTGAGGTACAAGTCTGGTAGGTTGCTACCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTTAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGAGGATGGCTGTTTTCTCCACCATTTCTAGTGAGCAGTAG 825 0.4715 MNMDMCQNVSVSGECQQVQVFAPSCSSSLDDLFSAQNTEVDVELEWLSEFVEDCFSSPPSCVLVPIGVKTTSTSTNLSSGTLKRPQQQNESPLQNFAVPGKARSKRKRLSAPRTNKDPLNIWSHHLNPQNESLCSDPPLLKQAYWLADSELIMPKPKDEEQEEVVTKEDEKVINVMSKESFGDSELEEGSNGQQPMPTRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVFSTISSEQ 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01071 274 Pfam GATA zinc finger 201 235 IPR000679 GO:0006355|GO:0043565
Gma19g01071 274 CDD ZnF_GATA 200 247 IPR000679 GO:0006355|GO:0043565
Gma19g01071 274 Gene3D - 192 263 IPR013088 GO:0006355|GO:0008270
Gma19g01071 274 ProSiteProfiles GATA-type zinc finger domain profile. 195 231 IPR000679 GO:0006355|GO:0043565
Gma19g01071 274 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 274 - -
Gma19g01071 274 PANTHER GATA TRANSCRIPTION FACTOR 3 274 - -
Gma19g01071 274 ProSitePatterns GATA-type zinc finger domain. 201 226 IPR000679 GO:0006355|GO:0043565
Gma19g01071 274 SMART GATA_3 195 249 IPR000679 GO:0006355|GO:0043565
Gma19g01071 274 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 259 - -
Gma19g01071 274 MobiDBLite consensus disorder prediction 73 95 - -
Gma19g01071 274 MobiDBLite consensus disorder prediction 73 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01071 Gma-Chr19 38793033 38794483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01071 42 263 C2C2-Gata Transcription Factor Family AT4G32890 42.291 2.54e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma19g01071 GATA 7e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01071 19 38793033 38794483 Gma19g01071 19 38793033 38794483 ECH
Gma19g01071 19 38793033 38794483 Gma16g00382 16 3983280 3984753 GST
Gma19g01071 19 38793033 38794483 Gma16g01393 16 32945406 32947273 PCT
Gma19g01071 19 38793033 38794483 Gma02g00646 02 6315396 6317093 PCT
Gma16g01393 16 32945406 32947273 Gma19g01071 19 38793033 38794483 PCT
Gma02g00646 02 6315396 6317093 Gma19g01071 19 38793033 38794483 PCT