Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01065 ATGGCTAGCAATCCTTCCCCTCACGGGCACATGCATCAGCATCAGTTTGCGTTACAGGGCACAGAGTCAAAGCCTTGTGACGCAGAATCACTGGTGCCGGCGACCCTTTTGATTAAGCACTTGCCAGAAGCCATTCCTGACGTCACCCTCTCTCGGATCTTGGCCAATTTCGGCGCTTCCTCAGTTCGCCCTTGCTCTACTGGCAGGTTGAGAAATTGTGCTTTTGCGGATTTCAAAAATGAGATTGTGGCATCTCAAGCACAACGGCAACTAAATGGGTTGAGATTTCTTGGTAAAGTCTTGTCAGCAGAGAGAGCTAGTAACCCAACTGAGAATGGTGAAAAAAGTAGCGGAGACCAGTTGGGAAAGGACTCTAAAACATCAATGCTGAAGAATGCAAATGTAACCAAACCTATTGATGGAGATACAAAATCAGGAGGCCTCCCTATTCCTGAACCTATTGCTGATAGACTTGGTGTCAATTATCCATTTCCTCCACATCTTGAGTATGCTTACCCTCCACCTGATGGAAATATATTGACCAATATTGTGAATGCTCTAATTGCTGTTCCCCGCTTTTACACTCAGGTTGTTCTACACTTGATGAACAAAATGAACATCCCGGCTCCGTTTCGTATGGCACTGCCCACACCTCCATTACCTCCAGAGGTACCAGCACCGCCACCACCTCTACCTGCACCTACTGTAACTGTGAATCCTTGGTCTGCAGATCTGTCTAGTGGCGAATCTGAGATGGAATCTTCAGATGAGGAGGATGAAGCAAGAATAAGAAAGTCTGGACAAAAGCGTGCCAGGCGTGAGACCATTGTTGGCCCTGCTATTGATAAGGGTGTGGCTCATGAGTCTGTTGGAGTAAAACCAGCCACCTTGGTTCCAAAGGAAATCCCTGTGATAAAAAAGAACCATGTCTTAAAGATAAACATTGTTCCCAAAGCAACAGTGAAAGAACATAAAGATGATGACACAACACAAGAGTTACAAGAGCCAGAAAAAGATGTTCCGGATCCTAACAAATTTTTGACTCCAGATGAATTGGAGAGAGGAAAGTTGCCTCCTGAGGAAATCTTATCCCTTCCAATGTTTAAGAACTATACAGCTGGAAATCCTGCTCCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGATTGCTGATGATTTCTATTTTATATTTGGCTCCTTGTTTGGAAGTATTGATGCTGCTAAGTCTGGTCTTCAAGTCAAACTGATGCAGGAAGGACGGATGAGGGGTCAAGCGTTTATAACGTTTCCCTCCATTGAGTTGGCCCATCATGCTTTGAATCTAGTGAATGGATATGTATTAAAAGGCAAGCCAATGATCATCCAGTTTGGTCGAAATCCTACTGCTGCTAAGGCAACTTAA 1404 0.4423 MASNPSPHGHMHQHQFALQGTESKPCDAESLVPATLLIKHLPEAIPDVTLSRILANFGASSVRPCSTGRLRNCAFADFKNEIVASQAQRQLNGLRFLGKVLSAERASNPTENGEKSSGDQLGKDSKTSMLKNANVTKPIDGDTKSGGLPIPEPIADRLGVNYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVVLHLMNKMNIPAPFRMALPTPPLPPEVPAPPPPLPAPTVTVNPWSADLSSGESEMESSDEEDEARIRKSGQKRARRETIVGPAIDKGVAHESVGVKPATLVPKEIPVIKKNHVLKINIVPKATVKEHKDDDTTQELQEPEKDVPDPNKFLTPDELERGKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVIADDFYFIFGSLFGSIDAAKSGLQVKLMQEGRMRGQAFITFPSIELAHHALNLVNGYVLKGKPMIIQFGRNPTAAKAT 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01065 467 MobiDBLite consensus disorder prediction 1 20 - -
Gma19g01065 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 108 IPR000504 GO:0003723
Gma19g01065 467 MobiDBLite consensus disorder prediction 105 134 - -
Gma19g01065 467 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 29 466 - -
Gma19g01065 467 CDD RRM2_RBM40_like 379 458 - -
Gma19g01065 467 MobiDBLite consensus disorder prediction 323 352 - -
Gma19g01065 467 MobiDBLite consensus disorder prediction 223 274 - -
Gma19g01065 467 MobiDBLite consensus disorder prediction 105 147 - -
Gma19g01065 467 Gene3D - 4 124 IPR012677 -
Gma19g01065 467 SMART rrm1_1 35 104 IPR000504 GO:0003723
Gma19g01065 467 SMART rrm1_1 379 456 IPR000504 GO:0003723
Gma19g01065 467 MobiDBLite consensus disorder prediction 257 274 - -
Gma19g01065 467 CDD RRM1_RBM40_like 35 106 IPR034147 GO:0005515
Gma19g01065 467 PANTHER UNCHARACTERIZED 29 466 IPR045164 -
Gma19g01065 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 380 452 IPR000504 GO:0003723
Gma19g01065 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 101 IPR000504 GO:0003723
Gma19g01065 467 SUPERFAMILY RNA-binding domain, RBD 34 461 IPR035979 GO:0003676
Gma19g01065 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 378 460 IPR000504 GO:0003723
Gma19g01065 467 MobiDBLite consensus disorder prediction 1 22 - -
Gma19g01065 467 Gene3D - 373 467 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01065 Gma-Chr19 38635634 38642830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01065 380 456 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 1.29e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01065 K13157 - gmx:100814307 880.552