LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma19g01056	ATGGTTGGTGCTATAAAAGCAGCGATTGGAGACGCAGTGTTGACTTTCATGTGGGTGTTCTGTTCCTCTGTGTTGGGAATTGCTTCTGGGTACATAACCAATGCCCTTAACCTTCAACACATCACCTACAATGGGTTCCCTTACGCTTCTTTTCTTGTCACCACCACCCTCGTTTTTGTTCTTGTTTTTCTTTTCACCATCATCGGCAATGTTCTTGGTGGGGCCAGCTTCAACCCCACCGGCACCGCTTCCTTCTACGCTGTTGGTCTTGGTTCGGATACGCTCTTCTCAATGGCGCTTCGGTTCCCTGCGCAGGCAGCTGGTGCTGCGGGTGGTGCAATGGCAATTATGGAAGTGATTCCTGCGAAGTACAGGCACATGATTGGGGGGCCTTCTTTGAAAGTGGATTTGCACACCGGGGCTGTCGCTGAAGGGGTGTTGACCTTTGTGATTACCTTTGCTGTTCTCCTCATCTTCCTCAGGGGCCCTCGTAGTGACTTGTTGAAGACTTGGTTACTGGCCACGGCAACTGTAGTTTTGGTCATGGTTGGATCTGCCTACACTGGGCCTGCCATGAATCCTGCTAATGCTTTTGGCTGGGCATACTTAAACAACTGGCACAACACATGGGACCAATTCTATGTATACTGGATTTGTCCCTTCACCGGAGCAATATTGGCTGCTTGGCTGTTTCGTGCTGTCTTTCCTCCACCACCACCACCAGAAGTAAAACAGAAGAAAGCATGA	747	0.4993	MVGAIKAAIGDAVLTFMWVFCSSVLGIASGYITNALNLQHITYNGFPYASFLVTTTLVFVLVFLFTIIGNVLGGASFNPTGTASFYAVGLGSDTLFSMALRFPAQAAGAAGGAMAIMEVIPAKYRHMIGGPSLKVDLHTGAVAEGVLTFVITFAVLLIFLRGPRSDLLKTWLLATATVVLVMVGSAYTGPAMNPANAFGWAYLNNWHNTWDQFYVYWICPFTGAILAAWLFRAVFPPPPPPEVKQKKA	248

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma19g01056	248	Pfam	Major intrinsic protein	4	231	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gma19g01056	248	PRINTS	Major intrinsic protein family signature	6	25	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gma19g01056	248	PRINTS	Major intrinsic protein family signature	58	82	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gma19g01056	248	PRINTS	Major intrinsic protein family signature	97	116	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gma19g01056	248	PRINTS	Major intrinsic protein family signature	143	161	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gma19g01056	248	PRINTS	Major intrinsic protein family signature	174	196	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gma19g01056	248	PRINTS	Major intrinsic protein family signature	214	234	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Gma19g01056	248	PANTHER	AQUAPORIN SIP1-1	3	247	IPR044222	GO:0015250
	Gma19g01056	248	SUPERFAMILY	Aquaporin-like	4	244	IPR023271	-
	Gma19g01056	248	Gene3D	Glycerol uptake facilitator protein.	3	240	IPR023271	-
	Gma19g01056	248	PANTHER	AQUAPORIN SIP1-1	3	247	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma19g01056	Gma-Chr19	38481330	38497072	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma19g01056	2	248	Major Intrinsic Protein MIP	AT5G18290	56.855	7.89e-87	256

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma19g01056	K09875		-	gmx:102669186	430.639

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma19g01056	19	38481330	38497072	Gma19g01056	19	38481330	38497072	ECH
	Gma19g01056	19	38481330	38497072	Gma16g00395	16	4162553	4168794	GST