Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01006 ATGTCCATCTTGCCCTCACAAACCCAAGCGGCATCTTCGTCTTCTTCCTCTGCGCCATCTCCCAACCCTAATCCCCAACATGGAACCGGAAACCCTATTCCTCAACCCTTCTCTTCTCTTTCCCCCTCACCAATCAACCTCGCTTTCGGATCTCTCCAGATCTCCGATACCCCAGGTTCGTCGTCTTCAGCCGCTCAAGATTCTGGTGGATCTTCCGGAAAGGTAGTGACAGAAGTAGGGTCTCCAAGTGGAGTGATGGTTTCACCTGAACAAAACTCTAGAACACGTTCTAGGAGTCACGGGGCAAGATGGACCCGAACGCGAACTGGAACAGTTTCATATCATAGAAATCAACAAACTCCTGGGTCCGTCAGTTCTCATGGAAGTGCCCCTTTGCCGGGGAGAAAAGCTCAGACGGTGAATGGGAACTACTTGCTGAATTTTCAATATGACCCAATATCCCGTTCTCAACCACGGGGTCCTCCTCCTCCTCCTACAACAAGAAGGCATCGGAAGAGGAAGCCGTACAGCAAAGATTTGTTTTTGCAGGCGAATTACAAGTTCACGGTACTAGGTTCGGGAAATTATTCGCCTGAGTCGATGGATCCAGATAAAATGTTGCAGTGGGAAGATATTATATGCGTGACATATTTGACCCCTTTTTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCCCTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTATTGATGGGTGAAGAGGATCACAAAGGTGATAGCTGGAAAAGGTGTCCTTTGTGCTTTGTGATGATATCTGCCAAGGATTTATATACGGTGCACATCACAAATGTCAAACAGTATCAAGTACGAGATAATGCTGAGTTCACCTTTTTAACGCGGAAAAAGGATTCCTTTACTCTGTCACTTAAAAATAAACAAGAGACAAATATCACATCACGTGCCAATGAAGATATCTGCGATCCCTTTTCTAAGTTCACTCTTACATCAGATGTAGATCTCTCGGTGAGACATGCAATATCTGATCTAGATGGTTGGCTAGCCAGAGCTGATTCAGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAACAATTAGAACAGAGGAAGAGGTATTGGAGTGAGCTCAGGTCTCATGACAGTGAAAAATCTTCTAAGCTTAATGATTACGAACATCAGATACCGTCAACAGTTGCAAATTCTGTGGATAGTGACGATGAAAACTGTTCTAATGGATCAAGAACTTCCTCTTCTGATTTCCTTGATCAAAATAAGGTTATGATGTTGGATAAGTCAACTGCCGGAATCTGTTTGGATCAAAAGTTGGATGTGGAGAAAGAATTAATAGAGCAGGAAATGAATTTATCTTCTTCATATGAGGAGAAAAACGATATTCAAAGGCATTCAAGTGGTGTTGTTGGAGATGTGAAGGAAAATGATTCATACAGTTTCTACCAGGCTGCTGATGGTCAGCATCTAATTCTTCATCCTCTGAATATGAAGTGTTTGCTTCACCATTATGGGAGCTATGATATGCTTCCTCACAGAATAAGTGGAAGGATCCTACAATTGGAGTCAGTTACTCAGTCTGAGGCCATCAGGAGGCGCTATCGATTCCTTAGTCATTTTCCATTAACCACAACCTTTCAGCTTTGTGAAGTTGATTTGAGTGAGATGTTGCCTCCTGAAGCATTTTCCCCATTTATGGATGAAATCAAGAAGCGTGCAAATCAGAGGAAGCAACTTGCTAAAAAGGAAAAGAAGGAAAAAATAATGGCTGAAGCTACTGCTGCTTATTCTCTTCCCATATCATTAAGTCATCAGTTTACTTCTCGCAATGATCCTCCGACATTCTCCATGGATGACTTTGAAGCTCTTGGAAATTCAACCATATCATCAAGTCCTCCCTTAGCTGGGGAGAGAAAATCGTTCTCAAATGTTACTAGGCTTGGGTTTGCTGCTGCTCATGATTCTCCATCCTTACAAATTCAAGAAACTAGTGGTCTGCATAATAACAACACAACTGCTGATTCTTCTGTCACAACAGGTTTGAGAAATGGGGAGACACAATCATACTCCAATGTTACATCAAGAACAGAATCTAATATAAGCTCGAATGCACCAAAGACAAATGAGTTGGGGAAGAAGGGAAAGAAACCAAATCGAGTTCTTCTGTCAACAGCTGGTGGTAGGCGCTATTGA 2247 0.4263 MSILPSQTQAASSSSSSAPSPNPNPQHGTGNPIPQPFSSLSPSPINLAFGSLQISDTPGSSSSAAQDSGGSSGKVVTEVGSPSGVMVSPEQNSRTRSRSHGARWTRTRTGTVSYHRNQQTPGSVSSHGSAPLPGRKAQTVNGNYLLNFQYDPISRSQPRGPPPPPTTRRHRKRKPYSKDLFLQANYKFTVLGSGNYSPESMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLLMGEEDHKGDSWKRCPLCFVMISAKDLYTVHITNVKQYQVRDNAEFTFLTRKKDSFTLSLKNKQETNITSRANEDICDPFSKFTLTSDVDLSVRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKRYWSELRSHDSEKSSKLNDYEHQIPSTVANSVDSDDENCSNGSRTSSSDFLDQNKVMMLDKSTAGICLDQKLDVEKELIEQEMNLSSSYEEKNDIQRHSSGVVGDVKENDSYSFYQAADGQHLILHPLNMKCLLHHYGSYDMLPHRISGRILQLESVTQSEAIRRRYRFLSHFPLTTTFQLCEVDLSEMLPPEAFSPFMDEIKKRANQRKQLAKKEKKEKIMAEATAAYSLPISLSHQFTSRNDPPTFSMDDFEALGNSTISSSPPLAGERKSFSNVTRLGFAAAHDSPSLQIQETSGLHNNNTTADSSVTTGLRNGETQSYSNVTSRTESNISSNAPKTNELGKKGKKPNRVLLSTAGGRRY 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01006 748 MobiDBLite consensus disorder prediction 680 726 - -
Gma19g01006 748 MobiDBLite consensus disorder prediction 1 136 - -
Gma19g01006 748 ProSitePatterns Zinc finger RING-type signature. 240 249 IPR017907 -
Gma19g01006 748 MobiDBLite consensus disorder prediction 680 748 - -
Gma19g01006 748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 218 308 IPR013083 -
Gma19g01006 748 Coils Coil 584 604 - -
Gma19g01006 748 MobiDBLite consensus disorder prediction 151 174 - -
Gma19g01006 748 MobiDBLite consensus disorder prediction 405 431 - -
Gma19g01006 748 MobiDBLite consensus disorder prediction 399 431 - -
Gma19g01006 748 MobiDBLite consensus disorder prediction 1 24 - -
Gma19g01006 748 CDD RING-HC_RNF10 225 272 - -
Gma19g01006 748 SUPERFAMILY RING/U-box 224 278 - -
Gma19g01006 748 SMART ring_2 225 271 IPR001841 -
Gma19g01006 748 PANTHER RING FINGER 10 FAMILY MEMBER 92 744 IPR039739 -
Gma19g01006 748 MobiDBLite consensus disorder prediction 31 95 - -
Gma19g01006 748 Pfam Zinc finger, C3HC4 type (RING finger) 225 271 IPR018957 GO:0046872
Gma19g01006 748 MobiDBLite consensus disorder prediction 104 127 - -
Gma19g01006 748 ProSiteProfiles Zinc finger RING-type profile. 225 271 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01006 Gma-Chr19 37497420 37505162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01006 122 698 C3H Transcription Factor Family AT3G26730 55.143 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01006 - - gmx:100818033 1425.99