Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01005 ATGTATATCTCTCTCTCTCCTACTCTCTGCGCAAAGTCATTGAAGAAGGGGCTCCTCCGAGGTTGTTGTCCTACGTTGACTTATGGAGATGATGATGTTAAGTTTTATGGCATGTGGAGGATGAGATTGTGGTACATGGTGTCAGCTCTCAAGAAGAGGAGAAGACGCGTCCACCTTCCAACCGAACCCAATGACCACCTCCCACCACCCATTCCCGAACCACCTTCTAACCACCCACCCTACGCCGAGATGATATACACGACAATCGAGGCGCTGAAGGAGAAAGACGGTTCTAGCAAGAGGGCAATAGCGAAGTATATTGAGCAAGTGTATACGCAGCTTCCACCAAATCACTCAAACTTGTTGACTCAGCACTTGACTCACTTGAAGAGTAGGGGATTGCTCCAAATGGTAAAAAAATCTTACGCCCTTCCTAGATCTGTGCCCGTGTCTGTTCCTGGACCTGCACCCACCGAAGGGACATCAACAGTGCCGACTGTTGTTGTTGCCATCACGACGACTCCGAGGCCCAGAGGTCGGCCTCGCAAGGCCCAAAATCCAGTTCAGAACTCGCCTTTGCCTCAGGATACTGTCAACGTGCAGGTTCAGCAGAATGTCGAGCCGGTCTGGGCTGCGCTTGGGCTTGCAGACGAGATTGGGTTATCTCATATACCTCTATATTTGTATCCCTTCCTTAATACAACCAGTAAGTCCAGATTATTTGAGTATTTGAGGCTTACCACTGTTGGAGTCATTGGTGCCTCTAATAGAACTCCTGAATTGCTTAAAATGAATCCCATTGGAAAGGTACACTTTGCTTGTTCCCGTCTTACTACTTAA 840 0.4833 MYISLSPTLCAKSLKKGLLRGCCPTLTYGDDDVKFYGMWRMRLWYMVSALKKRRRRVHLPTEPNDHLPPPIPEPPSNHPPYAEMIYTTIEALKEKDGSSKRAIAKYIEQVYTQLPPNHSNLLTQHLTHLKSRGLLQMVKKSYALPRSVPVSVPGPAPTEGTSTVPTVVVAITTTPRPRGRPRKAQNPVQNSPLPQDTVNVQVQQNVEPVWAALGLADEIGLSHIPLYLYPFLNTTSKSRLFEYLRLTTVGVIGASNRTPELLKMNPIGKVHFACSRLTT 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01005 279 MobiDBLite consensus disorder prediction 175 195 - -
Gma19g01005 279 PANTHER HISTONE H1 58 194 - -
Gma19g01005 279 PRINTS Histone H5 signature 64 85 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma19g01005 279 PRINTS Histone H5 signature 91 108 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma19g01005 279 PRINTS Histone H5 signature 170 184 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gma19g01005 279 Pfam linker histone H1 and H5 family 78 139 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma19g01005 279 Gene3D - 201 267 IPR011989 -
Gma19g01005 279 Pfam Cell differentiation family, Rcd1-like 222 254 - -
Gma19g01005 279 PANTHER HISTONE H1-LIKE 58 194 - -
Gma19g01005 279 Gene3D - 74 151 IPR036388 -
Gma19g01005 279 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 77 146 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma19g01005 279 SUPERFAMILY "Winged helix" DNA-binding domain 72 147 IPR036390 -
Gma19g01005 279 CDD H15 76 143 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gma19g01005 279 SMART h15plus2 75 141 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01005 Gma-Chr19 37483661 37486577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01005 84 151 Single Myb Histone (SMH) Gene Family AT1G49950 41.176 1.17e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Gma19g01005 Linker_histone 7.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01005 - - gmx:100788215 270.781