Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00996 ATGAATATGGAGCGCTACACGCTACCGGCACCACCCAATATTATTCCCGAGGAAGAAGAAAACATTGCCATTGCCATGGGTGCCCCTCTTATCCCTTCCTTTAAATCCATGCTTCAACAACACCCTCAACAACTTGACTCTTACTTTAACTCTTCAATTAGTTCTACTACTATCCCTTTTGTTCCTAACATGGACTCTTTTCTCTCTCTTGACCCTTTCTCACCTTCTTTCTTCAACAACAGCAGCAGCAGCAGCAACATGGCCCTCGACCCGGGTTTTGATTTGGGCCTGGACACTGGGCTTCACTCTTCTGCTCCTGCTCCCCATCTTTTTTCCCAGGCCCAGATGATGGGCTTCGAGTTCTCGGAGCTCGAAGCCCTGGCTGGACCTGGGAATGTAAATGTCCCGTTTGCGGACGGGGCAAAGGCGGCTGCTCTGCTGCGGTCTCCTCATTTCGAGCCGCCGCAGCAGCAGCCGACGCTGTACCGGAAGCGGAGGGGGACAGCCGCGGAGATTCCGGGGCTGGAGATGGTGAGAAGGAAGGGGAGGAAGTGGCAGGAAGGAGGAGGGGAGGGTGAGGAAGGGAGCAGTGCTGACGTGGGCGGTTCCGGGTTGAACTATGAGTCTGATGAGCAGAATGAGAGCAATGGGTTGAAGCTGAGTGAGAATGGTGGAGATAACAAGGGGAAGAAGAAGGGGCTGCCCGCCAAGAATCTCATGGCGGAGAGGCGCCGCCGGAAGAAGCTCAATGATAGGTTGTACATGCTCAGGTCTGTTGTCCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTTGGGGATGCAATTGACTACTTGAAGGAGTTGCTGCAGCGGATTAATGATCTTCATCACGAGCTGGAGTCAACTCCACCTGGCTCGTCGCTGACACCTTCTTCTTCTACAAGCTTTCAGCCTTTAACACCCACCCTGCCAACCCTTCCCTGTCGGGTCAAGGAGGAACTGTATCCTGGCACCTTGCCAAGCCCTAAAAACCAAGCTGCAAAGGTTGAGGTTAGAGTAAGGGAAGGGAGAACTGTCAACATTCATATGTTCTGCACCCGCCGACCAGGTCTTTTGCTTTCTACCATGAAGGCTTTGGATAACCTCGGATTGGATGTACAGCAGGCTGTTATTAGCTGTTTTAATGGCTTTGCTTTAGATGTGTTCAAAGCTGAGCAATGCAGAGAAGGCCAGGATGTCCTCCCTGAGCAAATTAAAGCGGTGCTCTCGGATTCTGCTGGCTTCCATGGTATGATGTGA 1281 0.5199 MNMERYTLPAPPNIIPEEEENIAIAMGAPLIPSFKSMLQQHPQQLDSYFNSSISSTTIPFVPNMDSFLSLDPFSPSFFNNSSSSSNMALDPGFDLGLDTGLHSSAPAPHLFSQAQMMGFEFSELEALAGPGNVNVPFADGAKAAALLRSPHFEPPQQQPTLYRKRRGTAAEIPGLEMVRRKGRKWQEGGGEGEEGSSADVGGSGLNYESDEQNESNGLKLSENGGDNKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHHELESTPPGSSLTPSSSTSFQPLTPTLPTLPCRVKEELYPGTLPSPKNQAAKVEVRVREGRTVNIHMFCTRRPGLLLSTMKALDNLGLDVQQAVISCFNGFALDVFKAEQCREGQDVLPEQIKAVLSDSAGFHGMM 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00996 426 Pfam Helix-loop-helix DNA-binding domain 240 282 IPR011598 GO:0046983
Gma19g00996 426 MobiDBLite consensus disorder prediction 292 312 - -
Gma19g00996 426 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 73 426 - -
Gma19g00996 426 MobiDBLite consensus disorder prediction 224 244 - -
Gma19g00996 426 MobiDBLite consensus disorder prediction 176 190 - -
Gma19g00996 426 MobiDBLite consensus disorder prediction 150 244 - -
Gma19g00996 426 PANTHER BHLH TRANSCRIPTIONAL FACTOR 73 426 - -
Gma19g00996 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 303 IPR036638 GO:0046983
Gma19g00996 426 MobiDBLite consensus disorder prediction 294 312 - -
Gma19g00996 426 CDD ACT_UUR-ACR-like 355 396 - -
Gma19g00996 426 MobiDBLite consensus disorder prediction 202 222 - -
Gma19g00996 426 SMART finulus 239 288 IPR011598 GO:0046983
Gma19g00996 426 CDD bHLH_AtAMS_like 236 296 - -
Gma19g00996 426 Gene3D - 227 296 IPR036638 GO:0046983
Gma19g00996 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 233 282 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00996 Gma-Chr19 37381318 37385280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00996 123 399 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 65.480 1.07e-101 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma19g00996 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00996 - - gmx:100217333 736.102