Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00972 ATGTTGCCATGCGACTACTGCGACTCCAAACCCGCCTTACTCTTCTGCCGAGCTGATTCCGCTAAACTCTGTTTAGTTTGCGACCAGCACGTGCACGCCGCCAACGCCCTCTCCCTCAAGCACGTGCGCTTCCAGATTTGCGACTCCTGCAAGTCCGACACCGCCGTCCTCCGCTGCTCCACCCACAACCTCGTCCTCTGTCACAACTGCGACGTGGACGCCCACGGTGCCGACGCTTCATCCCTCCACCACCACCACCACCACCACCGCCGCCTCCACGGCCTCTCCGGCTGTCCCTCCGTCCCGGAGATCGCCTCCGCGCTGGGCCTTGATTTCCGGGCCCAGGAGCCCGTGGTCCCCACCGCCGCCTCCCGCGATGAGGTCTATGAGCAGGTGCTGGAAATTGCGCGCCAGAGGAACAACGGCCTCGGCGCCGAACAACTCAAGCTCGACGACTCACCCGGAAACGACGTCGTTGTTGTTGTTGACGAGATGCTGATTCAGCAGACGCCGTTCACCTCCTTGCTTATGTTGCAGAATTCTGAATCTGAGTTTGACGCTAGAAAAAGTAACGATAACAACGGTTACGGAACCGAGGCATGGGATCTTCACTGGAATTATAATAACCCCGCGTATCAGCCTCCTCAGGTGTGGGATTTTCAATTACAAAAATCAACAGATTGCAATGAACCAAGAGTTGTAACATTTGATGGTCTAGAAGTTCCAAAATTGTTTCAGGATGTGCACAACATGAATTACTCAACAATTGGTGATGATATTGATATTCTATCAAGAAATAATCAATCGGATCAGTCATCATCAAGCCATGCAAAGAGGAAAGAAGAGAGCAACAAAAAAGCTAGAGGTGGGTTATCATCAGAGTCCACATTGTTTGAATCCATACCGTATAGTGGCACCAACAATGTCGTTGTCATGGAGCATCTTGTGGGTGGGAATGAGAATGTTAGCACCTTAAAAGCCAGGGTTAGTTTGCAAGAGTTGGCTAAGAATAGAGGGGATGCCATGTTACGCTATAAGGAGAAGAAGAAAACGCGAAGGTACGACAAGCACATTCGCTATGAATCAAGGAAGGCCAGGGCTGATACTAGAAAAAGGGTGAGAGGGAGATTTGTGAAGGCAAGTGATGTTCAAGCATGA 1158 0.5112 MLPCDYCDSKPALLFCRADSAKLCLVCDQHVHAANALSLKHVRFQICDSCKSDTAVLRCSTHNLVLCHNCDVDAHGADASSLHHHHHHHRRLHGLSGCPSVPEIASALGLDFRAQEPVVPTAASRDEVYEQVLEIARQRNNGLGAEQLKLDDSPGNDVVVVVDEMLIQQTPFTSLLMLQNSESEFDARKSNDNNGYGTEAWDLHWNYNNPAYQPPQVWDFQLQKSTDCNEPRVVTFDGLEVPKLFQDVHNMNYSTIGDDIDILSRNNQSDQSSSSHAKRKEESNKKARGGLSSESTLFESIPYSGTNNVVVMEHLVGGNENVSTLKARVSLQELAKNRGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKASDVQA 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00972 385 MobiDBLite consensus disorder prediction 274 288 - -
Gma19g00972 385 MobiDBLite consensus disorder prediction 264 293 - -
Gma19g00972 385 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 2 383 - -
Gma19g00972 385 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Gma19g00972 385 CDD Bbox1_BBX-like 3 46 - -
Gma19g00972 385 Pfam CCT motif 338 380 IPR010402 GO:0005515
Gma19g00972 385 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 383 - -
Gma19g00972 385 ProSiteProfiles CCT domain profile. 338 380 IPR010402 GO:0005515
Gma19g00972 385 SMART bboxneu5 1 46 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00972 Gma-Chr19 37081459 37085181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00972 1 382 C2C2-CO-like Transcription Factor Family AT2G33500 35.765 5.64e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma19g00972 CCT 8.7e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00972 - - gmx:100786838 766.148