Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00911 ATGGACGAAATTGAAATCCCTGCCCATTTCCTCTGCCCCATTTCCCTTCAACTCATGAGGGACCCTGTCACGGTTTGCATAGGAATCACTTATGATAGAGAAAACATAGAGAGATGGTTATTTTCATGCAAGAACAACACATGCCCCGTTACTAAGCAGTGCCTATTAGACCATGGTCTCACTCCAAACCACACTCTACGCAGGCTGATCCAATCCTGGTGCACCCTCAATGCCTCACTTGGAGTTGAACGCATTCCTACTCCAAAGTCACCAATAGACAAAACTCATTGTGAAACTCCTCACAGAAGCAAAAAGGTTCCCAGAGAAGCAAGTCAAGTGCCTCACAAGGCTTCGATCCGTTGCCTTTGA 369 0.4634 MDEIEIPAHFLCPISLQLMRDPVTVCIGITYDRENIERWLFSCKNNTCPVTKQCLLDHGLTPNHTLRRLIQSWCTLNASLGVERIPTPKSPIDKTHCETPHRSKKVPREASQVPHKASIRCL 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00911 122 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Gma19g00911 122 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Gma19g00911 122 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Gma19g00911 122 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Gma19g00911 122 PANTHER OS11G0573500 PROTEIN 1 97 - -
Gma19g00911 122 MobiDBLite consensus disorder prediction 89 113 - -
Gma19g00911 122 PANTHER WDSAM1 PROTEIN 1 97 IPR045185 GO:0061630
Gma19g00911 122 MobiDBLite consensus disorder prediction 89 111 - -
Gma19g00911 122 CDD RING-Ubox_PUB 10 53 IPR045210 -
Gma19g00911 122 SUPERFAMILY RING/U-box 3 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00911 Gma-Chr19 35501295 35501663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00911 1 122 U-box Gene Family AT3G52450 63.415 4.09e-47 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00911 - - gmx:100786877 206.838