Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00793 ATGTCTTCCGTCTTCATATGCTTTCCAACACAGACATATGGGACGTCGAGTACTGAACTTCACTCCTTACGAATTCCTAGTATCGCCGATCGCTGTGGCCTTTCACTTTCTTCTCTACTTAGCGCGTATAACCACAACAACACTTCGCAGAACCAAAAGAACTGTTACATTGTGCTCAAACTGGCGGCGAATATGGAGGAAGAAGATGATTATGTTGAGTATGTGCCCGTGGCCAAGCGTCGGGCCTTGGAAGCTCAGAATATTCTCCAACGCAAAGGGAAGGCCTCTGCTGCCACTGACGATGATTTGGAGAAACAAAGAGTGGCTGAAACTAAGCCCAGTCTTCTGGTTAAAGCGTCACAGCTGAAACGAGAGCAACCCGAGATCAGTGTGACGGAGCAGATCGTTCAACAGGAGAAGGAGATGATTGAAAACTTGTCAGATAGGAAAACCCTCATGTCTGTCCGTGAATTGGCTAAGGGGATTACTTATACGGAACCTTTGCCTACAGGGTGGAAGCCGCCTTTGCATGTGAGAAGGATGTCTAAGAAGGAGTGTGATTTGATTCGAAAGCAGTGGCATATAATTGCTGATGGGGGTGATATCCCACCCCCGATTAAGAATTTTAAGGATATGAGGTTTCCAGAGCCAGTTTTGAAGAAGTTGAAAGCTAAGGGGATTGTACAACCAACACCCATTCAGGTGCAAGGCCTTCCTGTTATCTTATCTGGGCGGGATATGATTGGGATTGCATTCACAGGCTCAGGAAAAACTCTGGTCTTTGTGCTTCCAATGATCATGGTGGCAATGCAAGAGGAAATTATGATGCCTATTGTTCCCGGAGAAGGTCCATTTGGTTTGATTATTTGTCCATCAAGGGAACTGGCAAGGCAGACGTTTGAAGTGATTGAACAATTCTTGATACCTTTGAAGGAAGCTGGATATCCAGAGCTCAGGCCTTTGCTCTGTATTGGTGGAGTGGATATGAGATCGCAGCTTGATATTGTGAAGAAGGGTGTTCATATTGTTGTTGCCACTCCTGGGAGGCTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAATTGCAGGTATTTAACATTGGATGAGGCTGATCGATTGGTAGATTTGGGATTTGAAGATGACATTAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTTCTATTTTCTGCCACTATGCCTACCAAAATTCAGAACTTTGCCAGAAGTGCTTTGGTGAAACCTATTATTGTCAATGTGGGGCGTGCAGGGGCTGCAAATCTTGATGTAATTCAGGAGGTAGAGTATGTCAAGCAAGAGGCAAAAATAGTTTATCTCCTTGAGTGTCTACAAAAAACCCCACCTCCTGTTCTGATATTCTGTGAGAATAAGGCTGACGTTGATGACATCCATGAATACCTTCTCTTGAAAGGAGTGGAAGCAGTGGCCATCCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCTATTGCTGCTTTTAAGGCTGGAAAGAAAGATGTGTTGGTAGCAACTGATGTTGCATCCAAAGGATTGGAAGGACTGGACGATGTGGAAAGACCGAGGGGAAATTTGAAAGGCATCCTTTGTGTACCAATTTTCTCAAACACTACTAGTCCAGGATGA 1656 0.445 MSSVFICFPTQTYGTSSTELHSLRIPSIADRCGLSLSSLLSAYNHNNTSQNQKNCYIVLKLAANMEEEDDYVEYVPVAKRRALEAQNILQRKGKASAATDDDLEKQRVAETKPSLLVKASQLKREQPEISVTEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLPTGWKPPLHVRRMSKKECDLIRKQWHIIADGGDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSRELARQTFEVIEQFLIPLKEAGYPELRPLLCIGGVDMRSQLDIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLEGLDDVERPRGNLKGILCVPIFSNTTSPG 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00793 551 Gene3D - 432 550 IPR027417 -
Gma19g00793 551 CDD SF2_C_DEAD 434 528 - -
Gma19g00793 551 Pfam DEAD/DEAH box helicase 231 410 IPR011545 GO:0003676|GO:0005524
Gma19g00793 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 424 IPR027417 -
Gma19g00793 551 Gene3D - 175 426 IPR027417 -
Gma19g00793 551 PANTHER BNAA06G38640D PROTEIN 72 523 - -
Gma19g00793 551 SMART ultradead3 226 437 IPR014001 -
Gma19g00793 551 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 72 523 - -
Gma19g00793 551 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 207 235 IPR014014 GO:0003724
Gma19g00793 551 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 433 551 IPR001650 -
Gma19g00793 551 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 422 IPR014001 -
Gma19g00793 551 Pfam Helicase conserved C-terminal domain 446 522 IPR001650 -
Gma19g00793 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 522 IPR027417 -
Gma19g00793 551 CDD DEADc_DDX41 218 423 IPR044113 GO:0000398|GO:0003724|GO:0005524
Gma19g00793 551 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00793 Gma-Chr19 32302501 32305348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00793 205 523 Eukaryotic Initiation Factors Gene Family AT3G19760 30.247 8.57e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00793 K13116 - gmx:100819984 894.034