Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00653 ATGATAATTAAGCGGAACCTGAAATCGCAAATGCCGAGTCTGAAACGGCGGCGTCTCGGCGACGCGGCAGGGGAGGACGACGGCGACGAGTGCACGGCGGAAAGGAAGAAGAGGAGGAAGACGAGCGGGTACTGCTACCCTCTGAATCTCCTCGTCGGCGTAATACCGGCCAGTTTTAGCGGGCTTTTAGGCGCGCCCGAGAAAGGATGCCAGGTGGCGGCGAGCTCGGAGGGCGGCAAGAAGAACGGTTCGCGGCCGCCGGCTCTGGTGCGGACGTCGCGGGGGCGGGTGCAGGCGCTGCCGTCGCGGTTCAACGATTCGGTGATTGAGGATTGGAGGAAGGACAGCAGCAAGGTTGAGGTTGAATGTGAATTAGACGAAGAATTCGAGAGTGTGAAGAAGTCGAGAAAAGGAAAGATCAATAATAAAGGTAGAGGGTATTCTACACTGTGTGAAGAGGTGCTGCTTAAGAATTTTGATGATGCCAGCAAGGAGGAGAAGAAGAAGAAAGAGGGGTTGTATGAACCAGAAGACTTTTATGCTGGGGATATAGTGTGGGCCAAGGCAGAGATGAAGGAACCTTTTTGGCCTGCCATTGTCATTGATCCTATTTGTCAGGCACCGGAGCTAGTTTTGAAGTCGTGTATTCCTGATGCTGCTTGTGTCATGTTTCTTGGCTCCGCTGGGAGTGGAAATGAAAGGGACTATGCATGGGTCAAGTACGGGATGATTTTTCCGTTTATGGATCATGTAGACAGGTTTCAGGGGCAGTCTGAATTGGGTTGCTATAACTATAATCCCTCTGAATTTCAAATATCAATAGAGGAGGCATTTTTGGCAGATCAGGGTTTTACAGAGAAGTTGATAGCAGATATAAATACAGCAGCTGGTAGAACTGGTTGTGGTGATTCTGTACTGAAAGGCTTTCAGAAGGTCACTGCTTCGAACCAGAATGCAGCATGTCACTTTCTGAACCAGGATTTATTTGATAAGAAGAAAGACATGCGATCTTGTGAAGTATGTGGATTGGAGCTTCCTTTCAAAATGTCAAAGAAAATGAACTATTTGATTCCTGGCAGCCAATTTCTATGTAAAACATGTGCTAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAATTTGGAATCATTCAGATAGCGGAAGTTGGGTGCGCTGTGATGGATGTAAAGTATGGGTGCATGCAGAATGTGACAAAATTTCCAGCAACCTTTTCAAGAATCTTGGAGGATCTGATTATTTCTGTCCTACATGCAAAATAAAGTTTGATTTTGAGTTAACTGATTCAGAAAAATCACAGCCAATAGTCAAATGGAAAAAAAACAGTGGGCAGCTAGTGCTTCCTAACAAGGTCACTGTTCTCTGCAATGGCATGGAAGGGACATATTTTCCAAGCCTTCACTTAGTTTTATGCAAGTGTGGTTTTTGCGAGACTAGAAAACAATCACTTAGAGAATGGGAACGACACACAGGTTCCAAATTTAGAAATTGGAGGACAAGTGTTCTGGTGAAAGGATCCATGCTATCGCTGGAAAAATGGATGCTGCAAGTGGCTGAGTTTCATGCTAATGCTGTAGTTTCTGTGAAACCTAAAAAACCTTCCTTTAAAGAAAGGAAACAGAAGTTGCTTACCTTTCTACAAGagaagtatgaaccagtttgtactaagtggactacagaacgatgtgctgtatgtagatgggttgaagattgggattacaacaaaattatcatttgcaacagATGTCAAATAGCCGTTCATCAAGAATGTTATGGAGCAAGAAATGTTCAAGATTTTACGTCATGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAGCAGGAATGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTTACTTGTGCTTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAAAAGATGGAGCCTGCATTGGGTATTCTGAGTATTCCATTGAATTCTTTTGTGAAGATTTGTGTTATTTGTAAGGAAATTCATGGTTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTCCATGCTATGTGTGCATCAAGGGCTGGTTATCGGATGGAGTTGCATTGTATGGAGAAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTACCACAGAGCTCCCAATCCAGACACTGTTTTAATTATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTTCAAACTAAGAGAAAAGCTGGATCAAGATTGATTTCATCTAAAAGAATAAAGGTTGAAGACACTTCTCCTGCAGAGAACACTAGACATGAGCCATTCTCTGCTGCTAGGTGTCGAATATATCGAAGAACAAATCATACAAAAAAGAGAGCAGCAGGTGAAGCCATTGCTCATCATGTGAGGGGTCACTACCATCATCCTTTAGATGCAATACAGAGTTTAAATGCAGACAGAATGGTAGACAAGCCTCCAGCATTTTCTTCTTTCAGGGAACGCCTTCATCATTTACAGAGAACAGAAAATGAAAGAGTTTTCTTTGGTAGATCAGGCATACATGGATGGGGCCTCTTTGCACGTCAAAATATTCAAGAAGGGGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGGCGGAGCATTGCAGATCTAAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTATCTTTTCAAGATAAGTGAAGAAGTGGTAGTAGATGCCACTGATAAAGGAAATATAGCACGGCTAATTAACCATTCTTGTATGCCCAATTGCTATGCAAGGATTATGAGTGTGGGTGATGATGAGAGCCGGATTGTACTCATCGCTAAGACTGATGTGTCTACTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGTTTATGTAAAGCATCAAACTGCCGGAAATTCATGAATTAG 3012 0.4167 MIIKRNLKSQMPSLKRRRLGDAAGEDDGDECTAERKKRRKTSGYCYPLNLLVGVIPASFSGLLGAPEKGCQVAASSEGGKKNGSRPPALVRTSRGRVQALPSRFNDSVIEDWRKDSSKVEVECELDEEFESVKKSRKGKINNKGRGYSTLCEEVLLKNFDDASKEEKKKKEGLYEPEDFYAGDIVWAKAEMKEPFWPAIVIDPICQAPELVLKSCIPDAACVMFLGSAGSGNERDYAWVKYGMIFPFMDHVDRFQGQSELGCYNYNPSEFQISIEEAFLADQGFTEKLIADINTAAGRTGCGDSVLKGFQKVTASNQNAACHFLNQDLFDKKKDMRSCEVCGLELPFKMSKKMNYLIPGSQFLCKTCARLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLGGSDYFCPTCKIKFDFELTDSEKSQPIVKWKKNSGQLVLPNKVTVLCNGMEGTYFPSLHLVLCKCGFCETRKQSLREWERHTGSKFRNWRTSVLVKGSMLSLEKWMLQVAEFHANAVVSVKPKKPSFKERKQKLLTFLQEKYEPVCTKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVCKACETPDIKQECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPLNSFVKICVICKEIHGSCTQCCKCSTYFHAMCASRAGYRMELHCMEKNGKQTTRMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKRKAGSRLISSKRIKVEDTSPAENTRHEPFSAARCRIYRRTNHTKKRAAGEAIAHHVRGHYHHPLDAIQSLNADRMVDKPPAFSSFRERLHHLQRTENERVFFGRSGIHGWGLFARQNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTDVSTGDELTYDYLFDPDEPDEFKVPCLCKASNCRKFMN 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00653 1003 ProSiteProfiles Post-SET domain profile. 987 1003 IPR003616 -
Gma19g00653 1003 PANTHER PHD FINGER PROTEINS 1 1003 - -
Gma19g00653 1003 Pfam PHD-finger 376 429 IPR019787 -
Gma19g00653 1003 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1003 - -
Gma19g00653 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 620 739 IPR013083 -
Gma19g00653 1003 ProSiteProfiles Zinc finger PHD-type profile. 568 619 IPR019787 -
Gma19g00653 1003 ProSiteProfiles Extended PHD (ePHD) domain profile. 622 737 IPR034732 -
Gma19g00653 1003 ProSiteProfiles SET domain profile. 861 978 IPR001214 GO:0005515
Gma19g00653 1003 Pfam PWWP domain 182 277 IPR000313 -
Gma19g00653 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 431 IPR013083 -
Gma19g00653 1003 ProSiteProfiles PWWP domain profile. 181 250 IPR000313 -
Gma19g00653 1003 CDD PHD_TCF19_like 377 427 - -
Gma19g00653 1003 Pfam PHD-finger 583 617 - -
Gma19g00653 1003 CDD ePHD_ATX3_4_5_like 625 736 IPR041955 -
Gma19g00653 1003 Pfam SET domain 872 977 IPR001214 GO:0005515
Gma19g00653 1003 Pfam PHD-zinc-finger like domain 624 736 - -
Gma19g00653 1003 SMART PHD_3 376 428 IPR001965 -
Gma19g00653 1003 SMART PHD_3 570 617 IPR001965 -
Gma19g00653 1003 SMART PHD_3 681 737 IPR001965 -
Gma19g00653 1003 CDD SET_SETD1-like 848 999 - -
Gma19g00653 1003 MobiDBLite consensus disorder prediction 14 29 - -
Gma19g00653 1003 Gene3D SET domain 837 1003 IPR046341 -
Gma19g00653 1003 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 560 619 IPR013083 -
Gma19g00653 1003 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1003 IPR025780 -
Gma19g00653 1003 SUPERFAMILY FYVE/PHD zinc finger 569 633 IPR011011 -
Gma19g00653 1003 SMART PostSET_3 987 1003 IPR003616 -
Gma19g00653 1003 SMART set_7 861 984 IPR001214 GO:0005515
Gma19g00653 1003 CDD PHD_ATX3_4_5_like 570 616 IPR042011 -
Gma19g00653 1003 Gene3D - 174 283 - -
Gma19g00653 1003 SUPERFAMILY FYVE/PHD zinc finger 375 431 IPR011011 -
Gma19g00653 1003 SUPERFAMILY SET domain 855 1000 IPR046341 -
Gma19g00653 1003 ProSitePatterns Zinc finger PHD-type signature. 571 616 IPR019786 -
Gma19g00653 1003 SUPERFAMILY Tudor/PWWP/MBT 173 279 - -
Gma19g00653 1003 MobiDBLite consensus disorder prediction 1 29 - -
Gma19g00653 1003 ProSiteProfiles Zinc finger PHD-type profile. 374 430 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00653 Gma-Chr19 22427158 22456193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00653 571 736 C2H2 Transcription Factor Family AT3G14740 32.759 8.55e-19 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma19g00653 zf-HC5HC2H_2 7.6e-27 CL0390