Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00607 ATGGCCTCATCTAGCTACTCTAACTCTCCCTGTGCTGCCTGCAAGTTCTTGAGAAGAAAATGCATGCCGGATTGCATTTTCTCCCCGTATTTCCCTCCAGAAGAGCCTCAGAAGTTCGCCAATGTGCACAAGATATTTGGAGCAAGCAACGTGAGCAAGCTTCTAAATGAGGTGCAGCCCCACCAGAGGGAGGATGCAGTGAACTCACTGGCCTATGAAGCCGAGGCACGGATAAAGGATCCGGTTTATGGCTGTGTTGGGGCAATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAGAAGGAACTTGATGCCACAAATGCTGATTTGATCCGTTATACCTGCAATGAAATGCCAACCACTCAAGATGGTAGAAGAATTATTGGTGAAGGGGGTGGTGGTGGTGGTTCCTCTCTTGGTCAATCTCCTGGTTACTATTACCCTTCTCCTTGGAACAATGATCCGCTTGGGGATGGTTATCACAGAGGTGACAATATATAA 501 0.479 MASSSYSNSPCAACKFLRRKCMPDCIFSPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTTQDGRRIIGEGGGGGGSSLGQSPGYYYPSPWNNDPLGDGYHRGDNI 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00607 166 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Gma19g00607 166 Coils Coil 89 109 - -
Gma19g00607 166 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Gma19g00607 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 155 - -
Gma19g00607 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00607 Gma-Chr19 15958630 15960662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00607 4 126 AS2 family AT3G27650 77.778 1.77e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gma19g00607 LOB 2.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00607 - - gmx:100306630 311.227