Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00586 ATGGACTCACCGCCCAGCAATCACCACGCGGTCGACGGAGACGCCAACGACGTCGTTAGATCCTTTTCCCACCGCGACGACGATGAAGACGGCAAGCCCCAACCCCTCACCGGGGACGGCGCCAGTCCTGGAAAGATATTCATAGGGGGTTTAGCGAGAGAAACGACGATTGCGCAATTCATCAAGCACTTTGGTAAATACGGTGAGATAACGGATTCCGTCATCATGAAGGACCGGAAGACCGGCCAGCCGCGTGGTTTCGGCTTCATAACTTACGCTGATCCCTCCGTGGTTGATACAGTGATTGAGGACACTCACATTATCAATGGCAAGCAGGTGGAGATTAAGCGGACGATACCGAGGGGGGCTGCTGGCTCGAACTCAAAGGACTTCCGAACGAAGAAGATTTTTGTGGGTGGAATTCCTTCGACTGTTACTGAAGATGAATTTAGGGACTTCTTTACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGGGACCACTCTACTAATCGTTCACGTGGATTTGGCTTTATCACTTATGACTCTGAAGAAGCTGTTGATGATCTCTTATCTGTGGGGAACAAAATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCAGAACCAAAGAAGCCAAATCCACCAGCTCCATCATCCAAGCGCTATAATGACTCCCGGTCTTCATATGGTGGCGGATATGGAGATGGTTATGATGGGTTTGGTGGTAATTTTGGTATGGGTGGCTATAGGTCAGGTGGTGCCTATGGTGGTAGGGGAAGTGCAGGTGCTTATGGTGGCTTTGGAAGTGAATTTGGTGGGTATGGAGGATATGCCAGTGCCATGGGGCCATATAGAGGTGATCCTTCACTTGGGTATGCTGGTCGATATGGTGGAGGCTATGGCAGAGGCTATGATCTTGGTGGGTATGGTGGACCTAGTGACGGTTATGGGGCATATGGTGGTGTTGGTGGTGGTTCCTCTGGTAGTGCCTATGGAAGCAGCTATGATGCCAGCTTAGGCGGTGGATATGGGGGGCCTGCTGGAGGCTCATTTTATGGGACTAGAGGGGGATACGCAGGTGCAGGAACTGGTCGATACCATCCTTATGGAAGATAG 1125 0.5076 MDSPPSNHHAVDGDANDVVRSFSHRDDDEDGKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDTVIEDTHIINGKQVEIKRTIPRGAAGSNSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLSVGNKIEFAGAQVEIKKAEPKKPNPPAPSSKRYNDSRSSYGGGYGDGYDGFGGNFGMGGYRSGGAYGGRGSAGAYGGFGSEFGGYGGYASAMGPYRGDPSLGYAGRYGGGYGRGYDLGGYGGPSDGYGAYGGVGGGSSGSAYGSSYDASLGGGYGGPAGGSFYGTRGGYAGAGTGRYHPYGR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00586 374 SUPERFAMILY RNA-binding domain, RBD 40 123 IPR035979 GO:0003676
Gma19g00586 374 Gene3D - 125 246 IPR012677 -
Gma19g00586 374 MobiDBLite consensus disorder prediction 1 43 - -
Gma19g00586 374 MobiDBLite consensus disorder prediction 208 230 - -
Gma19g00586 374 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 374 - -
Gma19g00586 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
Gma19g00586 374 SUPERFAMILY RNA-binding domain, RBD 129 243 IPR035979 GO:0003676
Gma19g00586 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 204 IPR000504 GO:0003723
Gma19g00586 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 113 IPR000504 GO:0003723
Gma19g00586 374 Gene3D - 44 123 IPR012677 -
Gma19g00586 374 MobiDBLite consensus disorder prediction 13 34 - -
Gma19g00586 374 SMART rrm1_1 135 208 IPR000504 GO:0003723
Gma19g00586 374 SMART rrm1_1 45 116 IPR000504 GO:0003723
Gma19g00586 374 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 374 - -
Gma19g00586 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00586 Gma-Chr19 13665925 13670253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00586 40 198 Eukaryotic Initiation Factors Gene Family AT1G71770 25.989 3.96e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00586 K12741 - gmx:100814490 515.768