Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00572 ATGGTGAATAGGCGTGTTCTAGGGTCCCAAACGAGTTCAAAATCGGTGACAGAGACAATGAGTGGTTCCCACGAGTTTGTGATCAAGGGTTACTCACTAACGAAGGGAATGGGCATTGGGAAATACATCGCGAGTGAGACTTTCATAGTGGGAGGGTTCCAATGGGCCATATACTTTTTCCCTGATGGTAGGGACCCGAAAGATAATGCCGCTTATGTCTCTGTCTTCGTTACACTCCATTCCGAGAGCACCAACGTTCGTGTGTTGTTCGATCTCACGTTGCTCGACCTATGCAAGAAAGGAGAGCACAAGGTTCATAGCCACTTCAGTCACTCCCTCACGATTGGGCCTTACACTCTCATAAACCTTGGCAGCATGTGGGGCTATACGCGGTTTTTCAAACGGAGACACCTTGAGACGTCAAATTTTCTCAAGGATGACTGCTTGAAGATAAATTGCACTATTGCGGTTTTAGTGTCGTCCATAGATTCTTCTCAGTTAAACACAATACAGGTTCCTAAATCTGATATTGGTGAACATTTTGGGATGTTGTTAGAGGATGAGGAATCATTTGATGTTACTTTCTCGGTTGGTGGAGAAAGGTTTCATGCTCATAAGCTTGTTTTGGCAGCTCAATCAACCATGTTTAAAACTCAATTTTTTAATGCGATGAAGAAGGATGATCAGGAGATAGTTGTTATTGACATGGAACCTAAGGTTTTCAAGGCTTTACTTCATTTTGTTTATAGAGACACTCTTTTGGAAGATGAAGAGCTCTTTATGTTGGATTCGTCATTCTTTCCTTCGTTGTCTGAATCATTTATAGCAAAGTTGTTAGCTGCTGGAGAAAAGTATGGTTTGCCAAGACTAATGTTGATGTGTGAATATATACTTTGTAAAGACATATCTGTAGATTCTGTTGCCAATATTTTTGCTCTTGCTGATGCTACCCACTTGAAGTCCATCTGTCAAAAATTTTCTGCTGAACAACTTTGA 996 0.4127 MVNRRVLGSQTSSKSVTETMSGSHEFVIKGYSLTKGMGIGKYIASETFIVGGFQWAIYFFPDGRDPKDNAAYVSVFVTLHSESTNVRVLFDLTLLDLCKKGEHKVHSHFSHSLTIGPYTLINLGSMWGYTRFFKRRHLETSNFLKDDCLKINCTIAVLVSSIDSSQLNTIQVPKSDIGEHFGMLLEDEESFDVTFSVGGERFHAHKLVLAAQSTMFKTQFFNAMKKDDQEIVVIDMEPKVFKALLHFVYRDTLLEDEELFMLDSSFFPSLSESFIAKLLAAGEKYGLPRLMLMCEYILCKDISVDSVANIFALADATHLKSICQKFSAEQL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00572 331 CDD MATH 22 155 IPR002083 GO:0005515
Gma19g00572 331 Pfam BTB/POZ domain 184 301 IPR000210 GO:0005515
Gma19g00572 331 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 8 331 - -
Gma19g00572 331 SMART BTB_4 191 302 IPR000210 GO:0005515
Gma19g00572 331 CDD BTB_POZ_BPM_plant 177 299 - -
Gma19g00572 331 ProSiteProfiles MATH/TRAF domain profile. 21 155 IPR002083 GO:0005515
Gma19g00572 331 SUPERFAMILY TRAF domain-like 18 159 - -
Gma19g00572 331 ProSiteProfiles BTB domain profile. 191 257 IPR000210 GO:0005515
Gma19g00572 331 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 8 331 IPR045005 GO:0016567
Gma19g00572 331 SUPERFAMILY POZ domain 170 300 IPR011333 -
Gma19g00572 331 Gene3D Potassium Channel Kv1.1; Chain A 158 329 IPR011333 -
Gma19g00572 331 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 20 157 IPR008974 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00572 Gma-Chr19 13003246 13004736 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gma19g00572 BTB 2.9e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00572 K10523 - gmx:100800259 659.448