Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00563 ATGTCGCGTGCGATGTGCAACCCAACAATGGTGAGTAGGAGTGTTCTAGGGTCCCAAACGAGTTCAAAATCGGTGACAGAGACAATGAGTGGTTCCCACGAGTTTGTGATCAAGGGTTACTCACTAACGAAGGGAATGGGCATTGGGAAATACATCGTGAGTGAGATTTTCATAGTGGGAGGGTTCCAATGGGCCATATACTTTTTCCCTGATGGTAGGGACCCCAAAGATAATGCCGCTTATGTCTCTGTCTTTGTTGCACTCCATTCCGAGAGCACCAACGTTTGTGCGTTGTTCGATCTCACGTTGCTCGACCTATGCAAGAAAGGAGAGCACAAGGTTCATAGCCACTTCAGTCACTCCCTCACGATTGGGCCTTACACTCTCATAAACCATGGCAGCATGTGGGGCTATACGCGGTTTTTCAAACGGAGACACCTTGAGACGTCAAATTTTCTCAAGGATGACTGCCTGAAGATAAATTGCACTATTGTGATTTTAGTGTCGTCCATAGATTCTTCTCAGTTAAACACAATACAGGTTCCTGAATCTGATATTGGTGAACATTTTGGGATGTTGTTAGAGGATGAGGAATCATTTGATGTTACTTTCTTGGTTGGTGGAGAAAGGTTTCATGCTCATAAGCTTGTTTTGGCAGCTCAATCAACCATGTTTGAAACTCAATTTTTTAATGCGATGAAGAAGGATGATCAGGAGATAGTTGTTATTGACATGGAACCTAAGGTTTTCAAGGCTTTACTTCATTTTGTTTATAGAGACACTCTTTTGGAAGATGAAGAGCTCTTTATGTTGGATTCGTCATTCTTTCCTTCGTTGTCTGAATCATTTATAGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTAATGTTGATGTGTGAATCTATACTTTGTAAAGACATATCTGTAGATTCTGTTGCCTATATTTTTGCTCTTGCTGATCGTTATCGTGCTACCCACTTGAAGTCCATCTGTCAAAAATTTTCTGCTGAAAACTTTGATGCCATGATGCATTCTGATGGTTTTGAGTATCTTAAGAAAAATTGCCCATTACTGCAATCAGAACTGCTAAAGACTGGA 1110 0.4126 MSRAMCNPTMVSRSVLGSQTSSKSVTETMSGSHEFVIKGYSLTKGMGIGKYIVSEIFIVGGFQWAIYFFPDGRDPKDNAAYVSVFVALHSESTNVCALFDLTLLDLCKKGEHKVHSHFSHSLTIGPYTLINHGSMWGYTRFFKRRHLETSNFLKDDCLKINCTIVILVSSIDSSQLNTIQVPESDIGEHFGMLLEDEESFDVTFLVGGERFHAHKLVLAAQSTMFETQFFNAMKKDDQEIVVIDMEPKVFKALLHFVYRDTLLEDEELFMLDSSFFPSLSESFIAKLLAAAEKYGLPRLMLMCESILCKDISVDSVAYIFALADRYRATHLKSICQKFSAENFDAMMHSDGFEYLKKNCPLLQSELLKTG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00563 370 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 13 369 - -
Gma19g00563 370 Gene3D - 310 369 - -
Gma19g00563 370 Gene3D Potassium Channel Kv1.1; Chain A 176 305 IPR011333 -
Gma19g00563 370 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 13 369 IPR045005 GO:0016567
Gma19g00563 370 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 29 167 IPR008974 GO:0005515
Gma19g00563 370 ProSiteProfiles MATH/TRAF domain profile. 30 164 IPR002083 GO:0005515
Gma19g00563 370 SUPERFAMILY POZ domain 179 309 IPR011333 -
Gma19g00563 370 SUPERFAMILY TRAF domain-like 27 168 - -
Gma19g00563 370 SMART BTB_4 200 311 IPR000210 GO:0005515
Gma19g00563 370 ProSiteProfiles BTB domain profile. 200 266 IPR000210 GO:0005515
Gma19g00563 370 CDD MATH 31 164 IPR002083 GO:0005515
Gma19g00563 370 Pfam BTB/POZ domain 193 310 IPR000210 GO:0005515
Gma19g00563 370 CDD BTB_POZ_BPM_plant 186 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00563 Gma-Chr19 12643466 12645272 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gma19g00563 BTB 8.4e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00563 K10523 - gmx:100795857 741.11