Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00560 ATGTCGCGTGCGATGTGCAACCCAACAATGGTGAGTAGGAGTGTTCTAGGGTCCCAAACGAGTTCAAAATCGGTGACAGAGACAATGAGTGGTTCCCACGAGTTTGTGATCAAGGGTTACTCACTAACGAAAGGAATGGGCATTGGGAAATACATCGTGAGTGAGACTTTCATAGTGGGAGGGTTCCAATGGGCCATATACTTTTTCCCTGATGGTAGGGACCCCAAAGATAATGCCGCTTATGTCTCTGTCTTTGTTGCACTCCATTCCAAGAGCACCAACATTCGTGCGTTGTTCAATCTCACGTTGCTCGACCTATGCAAGAAAGGAGAGCACAAGGTTCATAGCCACTTCAGTCACTCCCTCACGATTGGGCCTTACACTCTCATAAACCATGGCAGCATGTGGGGATATACGCGGTTTTTCAAACGGAGACACCTTGAGACGTCAAATTTTCTCAAGGATGACTGCTTGAAGATAAATTGCACTATTGCGGTTTTAGTGTCGTCCATAGATTCTTCTCAGTTAAACACAATACAGGTTCCTGAATCTGATATTGGTGAACATTTTGGGATGTTGTTAGAGGATGAGGAATCATTTGATGTTACTTTCTCggTTGGTGGAGAAAGGTTTCATGCTCATAAGCTTGTTTTGGCAGCTCGATCAACCATGTTTGAAACTCAATTTTTTAATGCGATGAAGAAGGATGATCAGGAGATAGTTGTTATTGACATGGAACCTAAGGTTTTCAAGGCTTTACTTCATTTTGTTTATAGAGACACTCTTTTGGAAGATGAAGAGCTCTTTATGTTGGATTCGTCATTCTTTCCTTCGTTGTCTGAATCATTTATAGCAAAGTTGTTAGCTGCTGGAGAAAAGTATGGTTTGCCAAGACTAATGTTAATGTGTGAATCTATACTTTGTAAAGACATATCTGTAGATTCTGTTGCCTATATTTTTGCTCTTGCTGATCGTTATTGTGCTACCCACTTGAAGTCCATCTGTCAAAAATTTTCTGCTGAAAACTTTGATGCCGTGATGCATTCTGATGGTTTTGAGTATCTTAAGAAAAATTGGCCATTACTGCAATCAGAACTGCTAAAGACTGGAGTAGGATGCGAGAAAGAATTTAGTTGA 1137 0.409 MSRAMCNPTMVSRSVLGSQTSSKSVTETMSGSHEFVIKGYSLTKGMGIGKYIVSETFIVGGFQWAIYFFPDGRDPKDNAAYVSVFVALHSKSTNIRALFNLTLLDLCKKGEHKVHSHFSHSLTIGPYTLINHGSMWGYTRFFKRRHLETSNFLKDDCLKINCTIAVLVSSIDSSQLNTIQVPESDIGEHFGMLLEDEESFDVTFSVGGERFHAHKLVLAARSTMFETQFFNAMKKDDQEIVVIDMEPKVFKALLHFVYRDTLLEDEELFMLDSSFFPSLSESFIAKLLAAGEKYGLPRLMLMCESILCKDISVDSVAYIFALADRYCATHLKSICQKFSAENFDAVMHSDGFEYLKKNWPLLQSELLKTGVGCEKEFS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00560 378 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 29 167 IPR008974 GO:0005515
Gma19g00560 378 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 13 370 - -
Gma19g00560 378 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 13 370 IPR045005 GO:0016567
Gma19g00560 378 ProSiteProfiles MATH/TRAF domain profile. 30 164 IPR002083 GO:0005515
Gma19g00560 378 ProSiteProfiles BTB domain profile. 200 266 IPR000210 GO:0005515
Gma19g00560 378 Gene3D Potassium Channel Kv1.1; Chain A 176 305 IPR011333 -
Gma19g00560 378 SUPERFAMILY POZ domain 179 309 IPR011333 -
Gma19g00560 378 Pfam BTB And C-terminal Kelch 318 358 IPR011705 -
Gma19g00560 378 SMART BTB_4 200 311 IPR000210 GO:0005515
Gma19g00560 378 Pfam BTB/POZ domain 193 310 IPR000210 GO:0005515
Gma19g00560 378 SUPERFAMILY TRAF domain-like 27 168 - -
Gma19g00560 378 CDD MATH 31 164 IPR002083 GO:0005515
Gma19g00560 378 CDD BTB_POZ_BPM_plant 186 308 - -
Gma19g00560 378 Gene3D - 310 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00560 Gma-Chr19 12420316 12422145 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gma19g00560 BTB 2.4e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00560 K10523 - gmx:121174487 752.281