Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00558 ATGTCGCGTGCGATGTGCAACCCAGCAATGGTGAGTAGGAGTGTTCTAAGGTCCCAAACGAATTCAAAATCGGTGATAGAGAGAATGAGTGGTTCCCACGAGTTTGTGATCAAGGGTTACTCACTAACGAAAGGAATGGGCATTGGGAAATACATCGTGAGTGAGACTTTCATAGTGGGAGGGTTCCAATGGGCCATATACTTTTTCCCTGATGGTAGGGACCCCAAAGATAATGCCGCTTATGTCTCTGTCTTCGTTGCACTCCATTCCATGAGTACCAACGTTTGTGCGTTGTTCGATCTCACGTTGCTCGACCTATGCAAGAAAGGAGAGCACAAGGTTCCTGAATCTGATATTGGTGAACATTTTGGGATGTTGTTAGAGGATGAGGAATCATTTGATGTTACTTTCTCGGTTGGTGGAGAAAGGTTTCATGCTCATAAGCTTGTTTTGGCAGCTCGATCAACCATGTTTGAAACTCAATTTTTTAATGCGATGAAGAAGGATGATCAGGAGATAGTTGTTATTGACATGGAACCTAAGGCTTTACTTCATTTTGTTTATAGAGACACTCTTTTGGAAGATGAAGAGCTCTTTATGTTGGATTCGTCATTCTTTCCTTCGTTGTCTGAATCATTTATAGCAAAGTTGTTAGCTGCTGGAGAAAAGTATGGTTTGCCAAGACTAATGTTGATGTGTGAATCTATACTTTGTAAAGAAATATCTGTAGATTCTGTTGCCTATATTTTTGCTCTTGCTGATCGTTATTGTGCTACCCACTTGAAGTCCATCTGTCAAAAAGTTTCTGCTGAAAACTTTGATGTAAACTATTCAAGCTCCATCCACCATCAGTTCGTGACTATCTTTGCAATTCAGCAAAATTTTGCACTCACCATGAGTATTCTTGCTTCTTTCATCTATCTATTTTTCTACTCTGCTTTACTTGCACTCTCTCTCTACTCTCACCCACAGGTTTTACCACCGCAACCAGCGGGTACAATCGCTGGTCATAACCAATTTTCGTCACACCGGCATTGCTCAGTTTGTGCAGTTTCCAACTCTGAACAGTCAGAAACTTCTACCCCCTCTTAG 1092 0.4148 MSRAMCNPAMVSRSVLRSQTNSKSVIERMSGSHEFVIKGYSLTKGMGIGKYIVSETFIVGGFQWAIYFFPDGRDPKDNAAYVSVFVALHSMSTNVCALFDLTLLDLCKKGEHKVPESDIGEHFGMLLEDEESFDVTFSVGGERFHAHKLVLAARSTMFETQFFNAMKKDDQEIVVIDMEPKALLHFVYRDTLLEDEELFMLDSSFFPSLSESFIAKLLAAGEKYGLPRLMLMCESILCKEISVDSVAYIFALADRYCATHLKSICQKVSAENFDVNYSSSIHHQFVTIFAIQQNFALTMSILASFIYLFFYSALLALSLYSHPQVLPPQPAGTIAGHNQFSSHRHCSVCAVSNSEQSETSTPS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00558 363 Gene3D Potassium Channel Kv1.1; Chain A 105 270 IPR011333 -
Gma19g00558 363 Pfam BTB/POZ domain 126 239 IPR000210 GO:0005515
Gma19g00558 363 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 113 275 - -
Gma19g00558 363 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 14 114 - -
Gma19g00558 363 CDD MATH 31 105 IPR002083 GO:0005515
Gma19g00558 363 ProSiteProfiles MATH/TRAF domain profile. 30 155 IPR002083 GO:0005515
Gma19g00558 363 ProSiteProfiles BTB domain profile. 133 187 IPR000210 GO:0005515
Gma19g00558 363 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 14 114 IPR045005 GO:0016567
Gma19g00558 363 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 113 275 IPR045005 GO:0016567
Gma19g00558 363 SMART BTB_4 133 241 IPR000210 GO:0005515
Gma19g00558 363 CDD BTB_POZ_BPM_plant 119 238 - -
Gma19g00558 363 SUPERFAMILY TRAF domain-like 29 113 - -
Gma19g00558 363 SUPERFAMILY POZ domain 113 239 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00558 Gma-Chr19 12356185 12358307 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gma19g00558 BTB 1.3e-20 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00558 K10523 - gmx:100793753 313.153