Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00556 ATGTTGTTAGAGGATGAGGAATCATTTGATGTTACTTTCTCGGTTGGTGGAGAAAGGTTTCATGCTCATAAGCTTGTTTTGGCAGCTCGATCAACCATGTTTGAAACTCAATTTTTTAATGCGATGAAGAAGGATGATCAGGAGATAGTTGTTATTGACATGGAACCTAAGGTTTTCAAGgctttacttcattttgtttatagagacactcttttggaagatgaagaactctttatgttggattcgtcattctttccttcgttgtctgaatcatttatagcaaagttgttagctgctggagaaaagtatggtttgccaagactaatgttgatgtgtgaatctatactttgtaaagacatatctgtagattctgttgcctatatttttgctcttgctgatcgttattgtgctacccacttgaagtccatctgtcaaaaattttctgctgaaaactttgatg 460 0.1478 MLLEDEESFDVTFSVGGERFHAHKLVLAARSTMFETQFFNAMKKDDQEIVVIDMEPKVFKALLHFVYRDTLLEDEELFMLDSSFFPSLSESFIAKLLAAGEKYGLPRLMLMCESILCKDISVDSVAYIFALADRYCATHLKSICQKFSAENFD 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00556 153 Gene3D Potassium Channel Kv1.1; Chain A 1 117 IPR011333 -
Gma19g00556 153 ProSiteProfiles BTB domain profile. 9 75 IPR000210 GO:0005515
Gma19g00556 153 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 4-LIKE 1 152 - -
Gma19g00556 153 SMART BTB_4 9 120 IPR000210 GO:0005515
Gma19g00556 153 SUPERFAMILY POZ domain 2 118 IPR011333 -
Gma19g00556 153 Gene3D - 118 153 - -
Gma19g00556 153 Pfam BTB/POZ domain 3 119 IPR000210 GO:0005515
Gma19g00556 153 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 1 152 IPR045005 GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00556 Gma-Chr19 12312973 12313580 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gma19g00556 BTB 4e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00556 K10523 - gmx:100793753 304.679