Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00554 ATGTTGGCTGGTCACGGTTTGAGATCCCACACCAGAGATTCCTTCTCTCGCCCCTTCAGGAAGAAGGGTACCATCACCCTGACCACATACCTCAGAACCTACCACGTCGGTGATTATGTCGACGTCAAGGTTAACGGCGCCCTCCACAAGGGAATGCCACATAAGTTCTACCATGGTCGCACTGGTCACGTCTGGAATGTCACCAAACGTGCTGTTGGGGTCGAAGTCAACAAGCAGTTGGAGACTGTGGTGTTGACCCCAGGTTCTATAGCAGCTGGTGACGGAGCATCCTACAATGGCCCTAGGGGTATGCTTTCATCTTTTAAGTTTCTATCTAGTTTCTCACATGGTATCAATGTTCTTTGA 366 0.5 MLAGHGLRSHTRDSFSRPFRKKGTITLTTYLRTYHVGDYVDVKVNGALHKGMPHKFYHGRTGHVWNVTKRAVGVEVNKQLETVVLTPGSIAAGDGASYNGPRGMLSSFKFLSSFSHGINVL 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00554 121 SUPERFAMILY Translation proteins SH3-like domain 4 80 IPR008991 -
Gma19g00554 121 Pfam Ribosomal protein L21e 3 83 IPR001147 GO:0003735|GO:0005840|GO:0006412
Gma19g00554 121 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Gma19g00554 121 PANTHER 60S RIBOSOMAL PROTEIN L21-2-LIKE 1 85 - -
Gma19g00554 121 PANTHER 60S RIBOSOMAL PROTEIN L21 1 85 IPR001147 GO:0003735|GO:0005840|GO:0006412
Gma19g00554 121 Gene3D Ribosomal protein L21 1 87 IPR036948 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00554 Gma-Chr19 12088248 12089874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00554 1 80 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 81.250 1.39e-45 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00554 K02889 - gmx:100500046 159.073