Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00541 ATGGCTAGGAGCTGGCTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAGCACTACTCTATCTTCAGCTGATCAAATCAAAGATTGTGGGGCATATCGTGAATGTCCAAACTGTTCTTATCATATTGATAACAGTGATGTTTCTACTGAGTGGCCTGGCTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTCTTAGAACATTTAGCAGCAAAATGTGGCATTGGAAACACTCAGCAACACATGTTTATCAATGAGTTCATCCCAACACTGGAAGGAGACCAAGGAATTTGCTACACACATCCGGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTTATGTCCATTTCTTTCACAGAACAACCAATGCATATGCTACTGGTCAACGAAAGCGTCGAAAGATTCATCATCAACAGGGTTTGACTGAAGAGCATGTGCGCTGGCATAAGACTGGCAAGACGAAAGCTATAATAGAAGATGGAGCACATAAGGGCTTTAAGAAGATCATGGTTCTCTATGTAAGATCCAGTGAGAATGGGTCCAGGTCTTATAAATCCAACTGGGTAATGCATCAGTACCATCTAGGGACTGTAGAAGAAGAAAAGGAAGGTGAATATGTGGTTTCAAAAATTTTCTGTCAACAGCAAAAGCAGACTGAGAAAAATGAGGGCAATCCAATGGCTGAAGATCCTGACAATATAATATCACGAACAGGTCCTAGAACTCCGAAACCAAATCCCCCCAATCCACCTCGTGCGGGAAAATCTGTTGATTGTGATGATAACATTGATGAAACTGTACTTCTGTCTTCTGCCCTGGATACCAAGACAATCCCTGGAGAATCACATGCTCCACAATCAGATATTCAGGATCAAGACTTTACTGGCAATGCTGCATGGCTAGCTGGCGAATCGCAGGCTGAGGAAAGCACCAAATATGATGGCTGTGACGACATCTTATTGTGCAAGGAGATCTTAGATTCTTCTGCTGTATTAAATGACCCTGGATTGGACTCCACCAATCTTGAAGACATTGCAGGCTATGCTACCCAAAGGGCTAGAAATGATAATGAATCTTGCGGAATTTCTGTTCTGGATTCACTGGAATTGGATACTCCTGATTTTGATCTTTCTAGTTTGTATTTTTGTTCTCAAGACAGTATCCTTGATTGGATGGACAGGTTATGA 1197 0.416 MARSWLIDIGGFAKKVKSTTLSSADQIKDCGAYRECPNCSYHIDNSDVSTEWPGFPLGVKFDPSDVELLEHLAAKCGIGNTQQHMFINEFIPTLEGDQGICYTHPENLPGAKKDGSYVHFFHRTTNAYATGQRKRRKIHHQQGLTEEHVRWHKTGKTKAIIEDGAHKGFKKIMVLYVRSSENGSRSYKSNWVMHQYHLGTVEEEKEGEYVVSKIFCQQQKQTEKNEGNPMAEDPDNIISRTGPRTPKPNPPNPPRAGKSVDCDDNIDETVLLSSALDTKTIPGESHAPQSDIQDQDFTGNAAWLAGESQAEESTKYDGCDDILLCKEILDSSAVLNDPGLDSTNLEDIAGYATQRARNDNESCGISVLDSLELDTPDFDLSSLYFCSQDSILDWMDRL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00541 398 ProSiteProfiles NAC domain profile. 55 217 IPR003441 GO:0003677|GO:0006355
Gma19g00541 398 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 396 - -
Gma19g00541 398 SUPERFAMILY NAC domain 39 217 IPR036093 GO:0003677|GO:0006355
Gma19g00541 398 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 396 IPR044799 GO:0003700
Gma19g00541 398 MobiDBLite consensus disorder prediction 220 262 - -
Gma19g00541 398 Gene3D NAC domain 64 222 IPR036093 GO:0003677|GO:0006355
Gma19g00541 398 Pfam No apical meristem (NAM) protein 56 198 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00541 Gma-Chr19 10106260 10110273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00541 33 219 NAC Transcription Factor Family AT4G28500 51.852 3.87e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma19g00541 NAM 4.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00541 - - gmx:100780442 813.527