Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00540 atgggatctggaaatgaggttcactcaattgtggagttcaatttggatgctaagtggcttatagatcccaagcaactatttgttgggcctaaaattggggaaggtgctcacgccaaagtgtatgaaggaaaatataaaaatcagaatgttgctgttaagattattaataagggtgaaaccccagagcagatttctaggagagaggctcggtttgccagagagattgccatgctatctagagttcaacacaaaaatctagtcaagTTTATTGGGGCCTGCAAAGAACCTGTTATGGTTATTGTAACTGAACTTCTCTTAGGTGGAACATTGCGCAAATATCTGTGGAGTATCCGGCCAAAGTGCTTGGATGTGCGCGTAGCAGTTGGATTTGCTCTTGATATTGCCCGAGCAATGGAATGCTTACACTCTCATGGGATCATTCACCGTGACCTTAAACCTGATAACTTGATCTTGACAGAAGATCATAAAGCAGTTAAACTAGCCGATTTCGGTCTAGCCAGAGAAGAGTCCTTAACAGAGATGATGACTGCTGAGACAGGGACATATCGATGGATGGCTCCAGAACTTTACAGCACTGTCACTCTAAGACAAGGGGAGAAGAAGCATTACAACCATAAGGTGGATGCCTATAGCTTTGCTATAGTGTTGTGGGAACTCGTCCATAATAAGTTACCTTTTGAAGGCATGTCTAATTTACAGGCTGCATATGCAGCGGCATTTAAGAATACAAGGCCAAGTGCTGATGAGCTTCCTGAAGATTTAGCTCTGATTGTGACCTCTTGTTGGAAAGAGGATCCAAATGATCGACCCAATTTTAGTCAAATAATAGAGATGCTGCTTCGATATCTAACCACCATTTCACCGTCCAAGCCAGTTGTTCCAATGCGAATCACTTCTAAGAATGCTGTATTGCCACCAGAATCTCCAGGTACAAGTGCTTTAATGGCTGGGAGAGATGATTCTGGAGAAACCCCAAAAGGCAATATTGAAGGCAGGTCTAAAGGGTTTTTCTTCTGCTGTTACTGA 1047 0.3238 MGSGNEVHSIVEFNLDAKWLIDPKQLFVGPKIGEGAHAKVYEGKYKNQNVAVKIINKGETPEQISRREARFAREIAMLSRVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLWSIRPKCLDVRVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTEDHKAVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELVHNKLPFEGMSNLQAAYAAAFKNTRPSADELPEDLALIVTSCWKEDPNDRPNFSQIIEMLLRYLTTISPSKPVVPMRITSKNAVLPPESPGTSALMAGRDDSGETPKGNIEGRSKGFFFCCY 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00540 348 PANTHER SERINE-THREONINE PROTEIN KINASE 1 328 - -
Gma19g00540 348 MobiDBLite consensus disorder prediction 313 335 - -
Gma19g00540 348 PIRSF TyrPK_CSF1-R 116 319 - -
Gma19g00540 348 PIRSF TyrPK_CSF1-R 11 127 - -
Gma19g00540 348 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g00540 348 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Gma19g00540 348 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Gma19g00540 348 CDD STKc_MAP3K-like 32 286 - -
Gma19g00540 348 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Gma19g00540 348 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Gma19g00540 348 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Gma19g00540 348 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Gma19g00540 348 Gene3D Transferase(Phosphotransferase) domain 1 107 306 - -
Gma19g00540 348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Gma19g00540 348 PANTHER PROTEIN KINASE ATN1 1 328 - -
Gma19g00540 348 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g00540 348 SUPERFAMILY Protein kinase-like (PK-like) 17 308 IPR011009 -
Gma19g00540 348 Gene3D Phosphorylase Kinase; domain 1 14 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00540 Gma-Chr19 10041525 10045358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00540 1 347 MAP Kinase Kinase Kinase AT3G27560 75.562 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gma19g00540 PK_Tyr_Ser-Thr 2.2e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00540 - - gmx:100809826 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02682 18 60978910 60998374 Gma19g00540 19 10041525 10045358 PCT
Gma08g03328 08 50076889 50078387 Gma19g00540 19 10041525 10045358 PCT