Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00533 ATGGGAAGACAGCCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATGAATTTCATCCTCAATAATGGTATTCACTGCTGGAGAACAGTTCCTAAGCTAGCAGGCTTGCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGATTTACTGAAATGGAAGAGGATCAAATTATACAGCTACATTCATGTCTAGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAGAAGAGGTTGAAACTCCTAGGTTTGGACCCTTTAACCCTGAAGCCATCTGAGCAAAAGGAAAAGTCTGTTGATGACAAAAAAAATATAGAATTACAACCAAACACTTCAAAAGGGTCTGAACAAGGTGTAGAGAACAAGTCCTTAGATATGCATAGCACAAGAGAAGTGCCAAAAACAGAAGGGAAAATAGAAGAAAACAAGGTAACTTGGGATGATACCACTGGATTTTTCAACAATTATGAAATGTTGTGCTCACAGTTGGACTTGGGATCATGGATGAGCCAAGAAACCAAAACCAGCACTAGTTCTTATTGTAGTTCTTCTTTCTCACTTGATGATTCTAGCAACCTTTCTGTGGGTGAATCCTCTTACCTTCAGGAAAATTCCTTACAACAATGGGTTGATGGTTTGGATTCCATTTTGTCATGGGATAGCTTCAATCCTCTTGAGAAAGATTTTCTCTTCTTGGATAATAGGCAATGA 822 0.3942 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCLGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPLTLKPSEQKEKSVDDKKNIELQPNTSKGSEQGVENKSLDMHSTREVPKTEGKIEENKVTWDDTTGFFNNYEMLCSQLDLGSWMSQETKTSTSSYCSSSFSLDDSSNLSVGESSYLQENSLQQWVDGLDSILSWDSFNPLEKDFLFLDNRQ 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00533 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma19g00533 273 MobiDBLite consensus disorder prediction 145 159 - -
Gma19g00533 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma19g00533 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma19g00533 273 CDD SANT 16 61 IPR001005 -
Gma19g00533 273 SMART sant 13 63 IPR001005 -
Gma19g00533 273 SMART sant 66 114 IPR001005 -
Gma19g00533 273 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 251 - -
Gma19g00533 273 MobiDBLite consensus disorder prediction 129 144 - -
Gma19g00533 273 PANTHER MYB DOMAIN PROTEIN 40 2 251 - -
Gma19g00533 273 Gene3D - 69 149 - -
Gma19g00533 273 MobiDBLite consensus disorder prediction 160 177 - -
Gma19g00533 273 Gene3D - 11 67 - -
Gma19g00533 273 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Gma19g00533 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma19g00533 273 CDD SANT 70 110 IPR001005 -
Gma19g00533 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma19g00533 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma19g00533 273 MobiDBLite consensus disorder prediction 129 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00533 Gma-Chr19 9572031 9573437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00533 1 196 MYB Transcription Factor Family AT5G16600 57.635 1.98e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma19g00533 Myb_DNA-binding 8.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00533 K09422 - gmx:100819471 536.569