Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00493 ATGGGTAGAGGCGAGGAAGAGTCGTGGTGGCGGCGGCGGTGGCAAGGGAACAAAGTGACAGGGAGGCTGGTTGTCGGAGTCCGTGAAGGTGAAGAGGCTGGAGAGGGAGGACGGTTAGCAGGGAAACCATTGTTGAAGCTCCTTTATTTGAACAATAATTTCCCTAAAACATCCCTTTCTTCTGCCTTTTTTCATCAAAAAATGGGTCGTGCAAGAATAACCTTGAAACACATCTCAAATGAGAGATCTCGCAAGACAGTGTCCAAGCAGAGAAAGAAAGGGCTAATTGAGAAAGTCTCTAAATTTTCCACCATGTTTGGAGATGAAGCATGTTTGATTGTGTATGATGATGAAAATGGTGATGTTGGACCTGTGACTTGGCCTCAACACCCCACACTGATACACGCCATCATTCAAAAGTATTATGAGATTCAATCAAAGAATGAGAGGCCTCAAGAGACTTTTGTTATTCAAGATTTTTTTGCGAATAGGAAAAAGATGGTTGAGGCTGATATTTCTAAAGTGCAAAAACAGATTGCCAGCATCaaAGGTTATGATCATAGAATTAACATGTTGAAAAACAAGCATCAGAGTGAAGCCAAGTTCAGTTTCGTGCAAAACATGGCTCAAGCAAGTGGTTTCTCCAACCATCCAAGTCAAATCCTCCTTAATGATGACAATAGGAGGGTGAATTTTACAAATTCAATGGATCAGTTTGATGGAGCTTGTAATTATGGAATTAATAATATGATGAGAAACATGCAACAAGGTGATGCTTGTTTTAGTTTTGTGCCAAACATGGCTCAGGAAAGTTCTAATGCTACCTCCTCACATGTCTCACATCCAAGCCAACTCAATTGCTTGCAAAACATTTCTCAAAGCCAACCTGTGCTTGAAGCTTTAAAGCCTCTTAGTGATAAGAATGAGATAGTAGATTCTAGTAATCAAGTTGATGTGCCTCTGTATTCAACTAATCAACTTGGTGAGTCTATAGACTGGGCTAATCAATTTGTTGACTTGGAGAACTGGTTTGATGGACCTATTGATTGGTGA 1053 0.4055 MGRGEEESWWRRRWQGNKVTGRLVVGVREGEEAGEGGRLAGKPLLKLLYLNNNFPKTSLSSAFFHQKMGRARITLKHISNERSRKTVSKQRKKGLIEKVSKFSTMFGDEACLIVYDDENGDVGPVTWPQHPTLIHAIIQKYYEIQSKNERPQETFVIQDFFANRKKMVEADISKVQKQIASIKGYDHRINMLKNKHQSEAKFSFVQNMAQASGFSNHPSQILLNDDNRRVNFTNSMDQFDGACNYGINNMMRNMQQGDACFSFVPNMAQESSNATSSHVSHPSQLNCLQNISQSQPVLEALKPLSDKNEIVDSSNQVDVPLYSTNQLGESIDWANQFVDLENWFDGPIDW 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00493 350 PANTHER MADS BOX PROTEIN 70 183 - -
Gma19g00493 350 PANTHER MADS BOX PROTEIN 182 328 - -
Gma19g00493 350 PANTHER PROTEIN, PUTATIVE-RELATED 70 183 - -
Gma19g00493 350 PANTHER PROTEIN, PUTATIVE-RELATED 182 328 - -
Gma19g00493 350 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 78 120 IPR002100 GO:0003677|GO:0046983
Gma19g00493 350 SMART madsneu2 68 128 IPR002100 GO:0003677|GO:0046983
Gma19g00493 350 ProSiteProfiles MADS-box domain profile. 68 119 IPR002100 GO:0003677|GO:0046983
Gma19g00493 350 Gene3D - 80 168 IPR036879 GO:0003677|GO:0046983
Gma19g00493 350 SUPERFAMILY SRF-like 68 145 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00493 Gma-Chr19 8575572 8578971 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00493 68 183 Type I MADS-box Gene Family AT5G55690 31.667 1.21e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma19g00493 SRF-TF 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00493 - - gmx:100806649 558.14