Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00460 ATGGGTCATGCAAGAATAACCTTGAAGCACATCTCAAAGGAGAGATCTCACAAGACAACTTTAATGTTGAGAAAGAAAGGACTAATTAAGAAAATCTTTGAATTTTCTACCATGTGTGGAGTTGAAGCTTGCTTGATTGTGTATGATAATGGCAATAATGGTGATGTTGCACCACTAACATGTCCCCGAGACCCCACAGTGGTACACTCCATCCTTCAAAAGTATGAGTCTAAGAAGAATAATGAGAAGTCTCACAAGAACTTTGGTATTCAAGACTTTTTTTAG 285 0.3754 MGHARITLKHISKERSHKTTLMLRKKGLIKKIFEFSTMCGVEACLIVYDNGNNGDVAPLTCPRDPTVVHSILQKYESKKNNEKSHKNFGIQDFF 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00460 94 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Gma19g00460 94 PANTHER MADS BOX PROTEIN 3 93 - -
Gma19g00460 94 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Gma19g00460 94 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Gma19g00460 94 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Gma19g00460 94 PANTHER PROTEIN, PUTATIVE-RELATED 3 93 - -
Gma19g00460 94 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00460 Gma-Chr19 7600821 7601105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00460 1 75 Type I MADS-box Gene Family AT5G55690 41.026 7.98e-13 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gma19g00460 SRF-TF 4.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00460 - - gmx:100777824 120.938