Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00403 ATGGAAGCAGAAGAACAATTTGAACTTCCTCATCAATCTCACGTTGCAGATTCTCCGGTTCAAGGCATGGAACGAGTGGTGGCTACGGTGAGCGGCTACCATGGCTCCGAGCGATTCAATCTCATCAAGCTGATTTCACAGGCTGGCGGCAATTACGTTGGTGCTATGTCGAAATCTATAACTCATCTGGTGTGTTGGAAATTTGAAGGAAAGAAATATGATATTGCGCTGAAGTTTAGAATACATGTAGTTAACCACCGATGGGTTGAGGACTGCATAAAGGAAGGAAGGCGTGTTCCAGAAGATTCTTATACCTTGCAAAGTGGACATGAAGTAGGGCCATTGCTACTGGAAGTTCCCCTTGTTCGAGCCAGTAGCCTGACAAAGAAAAAATTGGTCGGTGACAAGTTACATGCTACTGGGTCTGAAAGGAAAAATTCCGACTTCAGTTCTGGAGCCTCTGGAACTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGAGGAGTCAAGTTCATATTCATCTAGACTGTCAAGGAGGGGAAAAAGGCATATTTGCAATGGTAAGGAAAACACTACTGTGGCTAGACCTTCTCGTAAAGGAAGAAGACTTGCGAGTGATCTTGTTGACAAAGTAGTGTTGGGTCCTTCGATTTTGGATTTAACCACAGATGACCACCTTTTTAGAATGGATAGCCAACAAACTGATGCCGAAGCTACCTCTAGCCTTTCTGTTGGTGTCAATAATAACATTATTCTACAAAATAGTGAAGGACCTAACGCAGGATTAAGTAATCAAAGTAGAACTATCATTGGTGGTTCAAATGATATTGAACAGATCAAAGATTCAAGTCATATATCTAAACCTAGAAATTCAACTTCATTTATTGAAGATCCCCTACCTGTGCCACAAACATCAATTGATTTATGTTCCAGTGATGATGAAAAGTTCACAGATGGTGATCAGGCTGATAATGTTGCTGGTTTACCTACTTCAACAGAGATGTCATGTGTAATATGTCTCACAGAATTCAGCTCAACACGGGGGATTCTGCCATGTGGACATCGATTTTGTTTTCCATGCATCCAGAATTGGGCTGATCATACGACTTCAATGAGAAAAACATCAACATGCCCTTTGTGCAAGGCAAGTTTTATGATGATTAAGAAAGTTGAGCATGCAGCCACCGCTGATCAAAAAATATACTCCCAGACAATCCCATGTGACAATTCAGCCTCAGTTATTTTTATCCCCGTGGATCAAAATTTACCAGATAATATCTTTGAGTCTGCACAGTCAAATGCTTGTGTAGTTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAGTTGCGATGTTTGCCACATTCGAAAGATCCATTCCTATTGCATGGACCCTCCTCTACGGCCATGGATATGCACTCACTGCAAGGAACTTCGGATGCATTATCGTAGTAATCACTTGTATTAG 1473 0.4155 MEAEEQFELPHQSHVADSPVQGMERVVATVSGYHGSERFNLIKLISQAGGNYVGAMSKSITHLVCWKFEGKKYDIALKFRIHVVNHRWVEDCIKEGRRVPEDSYTLQSGHEVGPLLLEVPLVRASSLTKKKLVGDKLHATGSERKNSDFSSGASGTYVLEDSCLMKKHEESSSYSSRLSRRGKRHICNGKENTTVARPSRKGRRLASDLVDKVVLGPSILDLTTDDHLFRMDSQQTDAEATSSLSVGVNNNIILQNSEGPNAGLSNQSRTIIGGSNDIEQIKDSSHISKPRNSTSFIEDPLPVPQTSIDLCSSDDEKFTDGDQADNVAGLPTSTEMSCVICLTEFSSTRGILPCGHRFCFPCIQNWADHTTSMRKTSTCPLCKASFMMIKKVEHAATADQKIYSQTIPCDNSASVIFIPVDQNLPDNIFESAQSNACVVCRGREPEDLLESCDVCHIRKIHSYCMDPPLRPWICTHCKELRMHYRSNHLY 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00403 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 425 489 IPR013083 -
Gma19g00403 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 408 IPR013083 -
Gma19g00403 490 PANTHER F5A8.9 PROTEIN 19 167 - -
Gma19g00403 490 PANTHER F5A8.9 PROTEIN 155 485 - -
Gma19g00403 490 ProSiteProfiles Zinc finger RING-type profile. 338 383 IPR001841 -
Gma19g00403 490 SMART BRCT_7 20 96 IPR001357 -
Gma19g00403 490 SUPERFAMILY BRCT domain 19 107 IPR036420 -
Gma19g00403 490 ProSiteProfiles BRCT domain profile. 15 106 IPR001357 -
Gma19g00403 490 SUPERFAMILY FYVE/PHD zinc finger 432 480 IPR011011 -
Gma19g00403 490 Pfam twin BRCT domain 26 88 IPR001357 -
Gma19g00403 490 Gene3D BRCT domain 19 105 IPR036420 -
Gma19g00403 490 Pfam Zinc finger, C3HC4 type (RING finger) 338 382 IPR018957 GO:0046872
Gma19g00403 490 SUPERFAMILY RING/U-box 333 390 - -
Gma19g00403 490 ProSitePatterns Zinc finger RING-type signature. 354 363 IPR017907 -
Gma19g00403 490 SMART ring_2 338 382 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00403 Gma-Chr19 6239878 6246095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00403 44 112 Core DNA Replication Machinery Family AT4G02110 42.254 6.50e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00403 - - gmx:100815034 979.548