Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00388 atggaggacatagaagacaaaatcgagttgaaccatgatgggataaatgctataaaagaaatcattgagccaaaagctaatcaagagatggaaatggtgtctctaaatcccatagttattgtacatatggagggcatacaagccagaactgggttcaaccaggacgggataaatgccacaaaagaagttattgagccaaaatttgatgaagagaaggaaaagaagtcccaaaatccaatagttaataTTGTAGATAAAGAAGACATACAAGACAGAATCGAGTTCATCCAGCATGGAATAAATGTTGATCCAAAGATAGAAAGGATGTCCCCAAATACAACAGTTAATACTGTTTCCTTAATTGATTTTTTCACAAGTAATCAAATAAAGGAACATATTACAAGTCTGAGAAAGCAATTTAATCAGAGTACAATGGTTGAAGAATCAGGAAGTGATGTTTACACATGCCAATTATGTGAAATGGGAACACTTTCTTTTGCCCCCGTGCCAATCTATTGCTTTTGTTGTGGCATCCGCATCAAGCGAAACACATGCTATTACTATAGAAGAGAAGAAGATGATACACAACATTGCTTTTGCAGTTGGGTTGAATGCAATAAATGCAAATGTTGGCAGCATCAAATATGTGCACTCTACAACGATAAAAGAGATTTGGACTACAGAGCTGAGTATACATGTCCTATATGCCGCTTAAAGGAAATTGGAAATGGAATGCATGTACCCTTACCGAAGACAGCGGCTATGTTTAGTGCTAATGACTTGCCGAGAACCATGCTTAGCGACCACATAGAGAGCAGACTTTTTAAGCGTCTCTGGCAAGAGAATGAAGATTGGGCAAAAGCAGGGTATAAGAATCTTGATGAGTTTCTGGACATCTTTGAGGAGGAGAATTACCCTTCTGAATTTCCTTATACATTAAAAGTTATTCTTCTGTTTCAGAAGATTGAAGGAGTGGATGTATGCCTTTTCGCAATGTATGTTCAGGAGTTTGGCTCAGAATGTGGCTATCCTAATCAGCGTTCTGTGTACATTTCATATCTCGATTCTGTCAAGTATTTTAGGCCTAAAAGAGTGACTAAAAGTGGAGAAGCTCTTCGTACCATCGTTTACCATGAGATATTGATTGGATATCTTGATTTTTGCAAGAAACGAGGTTTCGCAACTTGCTATATATGGGCCTGTCCACCTATGAAGGGAGAAGATTATTTACTATATTGTCATCCTGACACCCAAAAAACTCCCAAGAAAGATAAACTACGGCACTGGTATCATTCGATGCTAAGAAAGGCTGCCGAAGAAAATATCGTTGTTGGTTCAACTAACTTACATGATCATTTCTTTGTTACTACTGGAAGTTGTGACTCCAAGGTAACAACTGCTCGTTTGCCTTACTTTGATGGGGGCTTCTGGTCTGGTGCTGCTATGGATAAAGCCAGGGACATTGAACAAGAGTGTGGAGGAGATTATAAAATGATCTTCGATAAAGTAGTATCCAAAAGATGTTTAAAGTCCATGGGACATGTAAATCCTCCTTCTGAAGGAACTGCCAAAGACATTCTAGTGATGCATAAACTGGGACAAACCATATTACCTTTCAAGGAAGATTTTCTCGTAGTTCAATTTCAGTATGTTTGCATGCACTGCCATGAAGTGATAGCAAATGGGAAGCGATGGTTTTGCACTGAATGCAAGAAATTTCAGGAGTGTGAAAGATGCCATACTGTTCACTCACACATTTCAGCCAAAGGCGAGAGGCATAGACTTCATCAGGTCCTCATGGATGACGTCCTTGGTGATACCAAGGAGAATGATATCATTCTTGATAATGGGTTATTTGATTCCAGACACAACTTTCTGAGCTTTTGCCAAAGGAACAGGTTTCAGTTTGACTCACTGCGCAGAGCCAAGTATTCCTCAATGATGATCCTCTACCTTGTGAAGAATCCTACTCTTCTGACTGTTGGAACAACATGCCGCGTTTGCTCTAAAAACAATGTGTCCCAGCGCTACTGGAAATGTGAGAATTGCCCTGAATTCACTTTGCAGCAACTTCTGGATGTTATTGAACATGCATCTCTGTGTCACTCAATCAAAACTCAACCATGCACTTACCCACATTGCCGTCAAATTAAAAAGCTGTTCGCTCATGCCAGTAGGTGCGAAATTCGATTTTCTGGGGGGTGCCAATTTTGTAAGAAGGTTTGGCAAGGACTGACTTTACACTCAAAGAATTGCAGAGACTCAGCATGTCGCATACCCCGTTGCAT 2288 0.3588 MEDIEDKIELNHDGINAIKEIIEPKANQEMEMVSLNPIVIVHMEGIQARTGFNQDGINATKEVIEPKFDEEKEKKSQNPIVNIVDKEDIQDRIEFIQHGINVDPKIERMSPNTTVNTVSLIDFFTSNQIKEHITSLRKQFNQSTMVEESGSDVYTCQLCEMGTLSFAPVPIYCFCCGIRIKRNTCYYYRREEDDTQHCFCSWVECNKCKCWQHQICALYNDKRDLDYRAEYTCPICRLKEIGNGMHVPLPKTAAMFSANDLPRTMLSDHIESRLFKRLWQENEDWAKAGYKNLDEFLDIFEEENYPSEFPYTLKVILLFQKIEGVDVCLFAMYVQEFGSECGYPNQRSVYISYLDSVKYFRPKRVTKSGEALRTIVYHEILIGYLDFCKKRGFATCYIWACPPMKGEDYLLYCHPDTQKTPKKDKLRHWYHSMLRKAAEENIVVGSTNLHDHFFVTTGSCDSKVTTARLPYFDGGFWSGAAMDKARDIEQECGGDYKMIFDKVVSKRCLKSMGHVNPPSEGTAKDILVMHKLGQTILPFKEDFLVVQFQYVCMHCHEVIANGKRWFCTECKKFQECERCHTVHSHISAKGERHRLHQVLMDDVLGDTKENDIILDNGLFDSRHNFLSFCQRNRFQFDSLRRAKYSSMMILYLVKNPTLLTVGTTCRVCSKNNVSQRYWKCENCPEFTLQQLLDVIEHASLCHSIKTQPCTYPHCRQIKKLFAHASRCEIRFSGGCQFCKKVWQGLTLHSKNCRDSACRIPRC 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00388 762 ProSitePatterns Zinc finger PHD-type signature. 156 236 IPR019786 -
Gma19g00388 762 ProSiteProfiles Zinc finger ZZ-type profile. 547 606 IPR000433 GO:0008270
Gma19g00388 762 SUPERFAMILY TAZ domain 686 762 IPR035898 -
Gma19g00388 762 SUPERFAMILY RING/U-box 527 593 - -
Gma19g00388 762 PANTHER HISTONE ACETYLTRANSFERASE HAC2 1 762 - -
Gma19g00388 762 SMART KAT11_2 266 559 IPR013178 GO:0004402|GO:0006355|GO:0016573
Gma19g00388 762 Pfam TAZ zinc finger 688 762 IPR000197 -
Gma19g00388 762 PANTHER CBP/P300-RELATED 1 762 IPR013178 GO:0004402|GO:0006355|GO:0016573
Gma19g00388 762 Pfam Histone acetylation protein 304 441 IPR013178 GO:0004402|GO:0006355|GO:0016573
Gma19g00388 762 ProSiteProfiles Zinc finger TAZ-type profile. 681 762 IPR000197 -
Gma19g00388 762 Gene3D TAZ domain 681 762 IPR035898 -
Gma19g00388 762 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 240 IPR013083 -
Gma19g00388 762 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 255 658 IPR031162 GO:0004402
Gma19g00388 762 SMART TAZ_2 684 762 IPR000197 -
Gma19g00388 762 Gene3D - 545 599 IPR043145 -
Gma19g00388 762 SUPERFAMILY RING/U-box 641 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00388 Gma-Chr19 5942019 5954446 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Gma19g00388 HAT_KAT11 4.3e-25 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00388 K04498 - gmx:102668168 1474.53