Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00366 ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCAACACTGGCACCACCTGGTCACGTGTCTGTGACACGTGCCTGTCTGCGCCATGCGTGCTGTACTGCCATGCAGACTCAGCATATCTTTGCTCTTCCTGTGATGCTCGTGTGCATGCAGCTAACCGTGTGGCCTCGAGACACAAGCGTGTGTGGGTGTGCGAAGCGTGTGAGCGTGCTCCGGCGGCGTTTCTATGCAAAGCTGACGCAGCTTCTCTTTGTTCTTCCTGTGATGCTGACATTCACTCAGCAAACCCTCTCGCTAGCCGCCACAACCGTGTTCCCATTCTCCCGATCTCAGGTTCCCTCTTCAGGGAACCAGAGCACAATCACAAACGCGTGGAACACGCGTTCGTGAATGAGGTTGAGGAGGAAGAGGAAGGGGTTTTTGATGAGTATGAAGACGAGGTTGAAGCTGCTTCGTGGTTGTTGCCACATCCTATGAAAAATAATGATGAAATTGAGGAGAATGATTGTGGTGACGAGGGTTTTTTGTTTGTTGATGAGTATTTGGACAATCTTGTTGATTGTTGTAACTCATGTGGTCACAATGACAACCAGTTTAGCAACGTTTATCAGCACCAGCAGAATTACAACACTGTCCCTCAGAACTATGTAGTGGTTCCAGTTCAGGTGCCGCAGCATTTTCAACCCGGTTTGGACTTTGACTCATCAAAAGCTGGGTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTTTCGGTTTCATCAATGGATGTTGGAGTTGTACCCGAATCAACAGTAAGTGGCATCTCAATGTCCCACTCAAAGTCACCAATAGGGACAAATGACCTATTTCCTCCCCTTCTCATGCCTTCACATCTCACACCAATGGACAGAGAGGCAAGAGTCCTAAGATATAGGGAGAAAAAGAAGACAAGAAAGTTCGAGAAGAAAATAAGATATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGCATAAAGGGTCGTTTTGCAAAGAGAACTGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCACAAAACTATTCAATGAAGTTGGAGGTAGCATTTTTCCCACTTTCTAG 1101 0.4723 MLKEGTNNVGGSNTGTTWSRVCDTCLSAPCVLYCHADSAYLCSSCDARVHAANRVASRHKRVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHNRVPILPISGSLFREPEHNHKRVEHAFVNEVEEEEEGVFDEYEDEVEAASWLLPHPMKNNDEIEENDCGDEGFLFVDEYLDNLVDCCNSCGHNDNQFSNVYQHQQNYNTVPQNYVVVPVQVPQHFQPGLDFDSSKAGFSYDGSLSQSVSVSSMDVGVVPESTVSGISMSHSKSPIGTNDLFPPLLMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTKLFNEVGGSIFPTF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00366 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 17 366 IPR045281 GO:0009909
Gma19g00366 366 SMART bboxneu5 65 107 IPR000315 GO:0008270
Gma19g00366 366 SMART bboxneu5 17 64 IPR000315 GO:0008270
Gma19g00366 366 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 17 366 - -
Gma19g00366 366 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
Gma19g00366 366 Pfam CCT motif 297 339 IPR010402 GO:0005515
Gma19g00366 366 CDD Bbox1_BBX-like 21 64 - -
Gma19g00366 366 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Gma19g00366 366 CDD Bbox1_BBX-like 64 107 - -
Gma19g00366 366 ProSiteProfiles CCT domain profile. 297 339 IPR010402 GO:0005515
Gma19g00366 366 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00366 Gma-Chr19 5574524 5576590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00366 1 366 C2C2-CO-like Transcription Factor Family AT3G02380 53.141 9.21e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma19g00366 zf-B_box 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00366 - - gmx:100805051 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00355 13 15352410 15354828 Gma19g00366 19 5574524 5576590 GST
Gma19g00366 19 5574524 5576590 Gma18g02517 18 59250461 59252810 PCT
Gma19g00366 19 5574524 5576590 Gma08g02363 08 23095162 23097808 PCT
Gma18g02517 18 59250461 59252810 Gma19g00366 19 5574524 5576590 PCT
Gma08g02363 08 23095162 23097808 Gma19g00366 19 5574524 5576590 PCT