Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00324 ATGGGGAGGGGAAGAGTGGAACTGAAAAGGATAGAGAACAAGATAAACAGGCAGGTAACGTTTGCAAAGAGGAGAAATGGGCTTCTCAAGAAAGCCTATGAGCTTTCTGTTCTCTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCACCCGTGGCAAGCTTTATGAATTCTGCAGCACCAACAGCATGCTCAAAACACTTGAAAGGTACCAAAAGTGCAGCTATGGTGCAGTGGAAGTCAGCAAACCTGGCAAAGAGCTTGAGCAGAGCAGCTACCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACCCAAAGGAACCTTCTTGGTGAAGACTTGGGCCCATTAAATACCAAAGATCTTGAGCAGCTTGAGCGCCAACTGGATTCATCTCTTAAGCAAGTGAGGTCAACAAAGACTCAGTTCATGCTGGACCAGTTAGCTGATCTTCAGAATAAGGAGCATATGTTGGTGGAAGCAAACAGATCTTTGACCATGAAGCTGGAAGAAATCAATTCAAGAAACCAGTATAGGCAAACATGGGAAGCTGGTGAGCAAAGTATGCCATATGGAACCCAAAATGCTCACTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACAACTCAAGCTCAACAAGTCAATGGATTTATTCCTGGATGGATGCTTTGA 750 0.4587 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTNSMLKTLERYQKCSYGAVEVSKPGKELEQSSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLTMKLEEINSRNQYRQTWEAGEQSMPYGTQNAHSQGFFQPLECNPTLQIGSDYRYIPEASEQQLAATTQAQQVNGFIPGWML 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00324 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma19g00324 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma19g00324 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma19g00324 249 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma19g00324 249 PANTHER MADS BOX PROTEIN 1 236 - -
Gma19g00324 249 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 236 - -
Gma19g00324 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Gma19g00324 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma19g00324 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma19g00324 249 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gma19g00324 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma19g00324 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma19g00324 249 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Gma19g00324 249 Coils Coil 125 145 - -
Gma19g00324 249 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00324 Gma-Chr19 4545909 4551489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00324 1 249 MADS-box Gene Family AT5G15800 71.103 6.00e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma19g00324 K-box 9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00324 K09264 - gmx:732643 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00376 13 15680377 15686111 Gma19g00324 19 4545909 4551489 GST
Gma19g00324 19 4545909 4551489 Gma18g02483 18 58893997 58899459 PCT
Gma19g00324 19 4545909 4551489 Gma08g02319 08 22430234 22435239 PCT
Gma18g02483 18 58893997 58899459 Gma19g00324 19 4545909 4551489 PCT
Gma08g02319 08 22430234 22435239 Gma19g00324 19 4545909 4551489 PCT