Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00316 ATGAGGCTTGTCGTCTCAGCTCTTTGTGTTCTTGTGTTATTCTCTTGTGCAGTTGCTTATGATCCTTTGGATCCAAACGGAAACGTAACAATCAAATGGGATGTAATGTCTTGGACACCAGATGGCTATGTGGCTGTGGTAACAATGCACAACTTCCAAATGTTTCGGCACATCATGAATCCTGGATGGACCTTGGGATGGACATGGGCAAAGAAAGAAGTCATTTGGTCCATGATAGGAGCTCAAACCACAGAACAAGGAGATTGCTCTAAGTTCAAAGGCAACATACCTCATTGCTGCAAGAAAATTCCCACAGTTGTGGACCTTCTCCCTGGTGTACCTTACAACCAGCAATTCTCAAACTGCTGCAAGGGTGGAGTAGTGGCAGCATGGGGCCAAGATCCTTCACAAGCTATCTCTTCCTTCCAAGTGAGTGTAGGCCAAGCTGGTACCTCAAACAAGACAGTTAAACTTCCCAAGAACTTCACTCTCTTTGCTCCAGGACCAGGCTACACTTGTGGCCCTGCAAAGATTGTTCCTTCCACCAATTTTCTTACGCCTGACAAGCGCCGCAAGACTCAAGCACTAATGACATGGAATGTTACCTGCACATACTCACAGTTTCTGGCAAGAAAGAACCCAAGTTGTTGTGTATCTTTGTCATCCTTTTACAATGAAACCATTACCCCTTGTCCCTCTTGTGCATGTGGCTGCCAGAACAAGAAGCATTGTGTCAAGGGAAACTCCAAAATTCTCAGCATGGTGGGGGTTCACACTCCAAAGAAAGACAATGAACCATTGCTGCAGTGCACTCATCACATGTGTCCAATCAGGGTCCACTGGCATGTGAAGACTAACTATAAGGACTATTGGCGAGTCAAGGTTGCCATAACAAACTTCAATTACAGAATGAATCACTCCCTTTGGTCTCTTGCTGTTCAGCATCCAAATCTCAACAATCTCACACAAGTTTTCAGTTTCAATTACAAGCCACTTCTTCCCTATGGATCCATAAATGATACTGGCATGTTCTATGGCATGAAGTACTTCAATGATCTTCTAATGGAAGCTGGACCAACTGGGAATGTTCAATCAGAGTTGCTTCTTCAGAAGGACAAGGATGCATTCACATTCAAGCAGGGTTGGGCATTTCCTCGCAAGTTTGGTGAATTGGTGCATATTGTGTCAGAATTTTGTGAAATTTTTGAAACCATGTATACCTTCTTAATGGTAACGTGA 1239 0.4391 MRLVVSALCVLVLFSCAVAYDPLDPNGNVTIKWDVMSWTPDGYVAVVTMHNFQMFRHIMNPGWTLGWTWAKKEVIWSMIGAQTTEQGDCSKFKGNIPHCCKKIPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSQAISSFQVSVGQAGTSNKTVKLPKNFTLFAPGPGYTCGPAKIVPSTNFLTPDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCQNKKHCVKGNSKILSMVGVHTPKKDNEPLLQCTHHMCPIRVHWHVKTNYKDYWRVKVAITNFNYRMNHSLWSLAVQHPNLNNLTQVFSFNYKPLLPYGSINDTGMFYGMKYFNDLLMEAGPTGNVQSELLLQKDKDAFTFKQGWAFPRKFGELVHIVSEFCEIFETMYTFLMVT 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00316 412 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Gma19g00316 412 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
Gma19g00316 412 PIRSF COBRA 1 392 IPR006918 GO:0010215|GO:0031225
Gma19g00316 412 PANTHER COBRA-LIKE PROTEIN 4 387 - -
Gma19g00316 412 PANTHER PROTEIN COBRA 4 387 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00316 Gma-Chr19 4359465 4362164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00316 17 339 COBRA Gene Family AT5G15630 85.139 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00316 - - gmx:100798678 834.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00316 19 4359465 4362164 Gma18g02472 18 58789363 58792650 PCT
Gma19g00316 19 4359465 4362164 Gma08g02308 08 22271886 22275072 PCT
Gma18g02473 18 58793025 58795582 Gma19g00316 19 4359465 4362164 PCT
Gma08g02309 08 22275843 22278007 Gma19g00316 19 4359465 4362164 PCT