Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00256 ATGGCGGAACCGTCGTccaccgccgccaccgctgccaccgccgccaccgcttccaccgctgATCCTCCGGCGCCAGTGACTAAAAGCTGGGCCGACGAAGCAGACGAAGAAACCAACAACACCTCCACCGCCGAGTCAGAAAGCTCCTCCATTAACCTGGAAGCGTTAACCATCGACGATAAAGAAAATAACTCTTCCAAATTCTTGGATGATCCCGATGATTCCAATATCCAAGCGGTTACTTCTGGCGACACGCCGTACACCTCGGCGGCGAGGTTCGAGGACCTGAGCCTCTCGCCGGAGCTTTTGAAGGGGCTCTATGTGGAGATGAAGTTTGAGAAGCCGAGCAAGATCCAGGCGATAAGCTTGCCGATGATCCTGAGCCCGCCCCACCGGGACCTGATCGCGCAGGCGCACAATGGCTCCGGCAAGACTACATGTTTCGTGCTTGGGATGCTCAGCCGCGTCGACCCAAAGGTGCAGGCGCCGCAGGCGCTCTGTGTCTGCCCCACCCGGGAGCTGGCCATTCAGAACGTGGAGGTGCTCCGCAGGATGGGGAAGTACACCGGGATTGCATCTGAGTGCCTTGTGCGGTTGGACCGGGATGCCGTTCATGTATCGAAAAGGGCACCTATTATGGCGCAGGTGGTGATTGGGACCCCAGGGACAATCAAGAAGTTCATTAGCTTCAAGAAACTTGGGACCTCGAGGTTGAAGATTCTTGTTTTCGACGAGGCTGATCAAATGCTTGCGCAGGAAGGATTTAGAGATGATTCTTTGAAGATAATGAAAGATATAGAAAAAGACAATAAAAAGTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACCGTCAAGAATTTCATTTCAAGGACAGTCAAGATGGATCATAATAAACTCTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAGTATAAAGTGTATTGTCCCGATGAACTTGCTAAGATTGATGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTATGGCCACAAGAGATAGTGCAAGATTATTGCACCAAGCACTTGTTAATTTGGGCTATGAGGTTACATCTATACAAGGTTCTCTTAGTAATGAAGAGAGAGACAAAGTTGTCAAGGAGTTCAAAGATGGTTTGACTCAAGTTCTTATATCAACAGATATTCTTGCTCGTGGCTTTGATCAGCAACAGGTTAATTTGGTCATCAATTATAATCTTCCAAATAAACACAGTTTACGGGATGAACCAGATTATGAAGTGTATCTGCACAGGGTTGGCAGAGCTGGGCGTTTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGATGAAAATGATGAAAGGCTCATGTCGAAGATTGAAAACCATTTTGGCACTTGTGTAACTGAGGTGCGAGCTCAAAGTGTTGAAGAATATAAAGCCGCTCTCAAGGAAGCCGGTTTACTGCAATGA 1488 0.4496 MAEPSSTAATAATAATASTADPPAPVTKSWADEADEETNNTSTAESESSSINLEALTIDDKENNSSKFLDDPDDSNIQAVTSGDTPYTSAARFEDLSLSPELLKGLYVEMKFEKPSKIQAISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCVCPTRELAIQNVEVLRRMGKYTGIASECLVRLDRDAVHVSKRAPIMAQVVIGTPGTIKKFISFKKLGTSRLKILVFDEADQMLAQEGFRDDSLKIMKDIEKDNKKCQVLLFSATFNDTVKNFISRTVKMDHNKLFVKKEELSLDAVKQYKVYCPDELAKIDVIKDYIFEIGENVGQTIIFMATRDSARLLHQALVNLGYEVTSIQGSLSNEERDKVVKEFKDGLTQVLISTDILARGFDQQQVNLVINYNLPNKHSLRDEPDYEVYLHRVGRAGRFGRKGAVFNLICDENDERLMSKIENHFGTCVTEVRAQSVEEYKAALKEAGLLQ 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00256 495 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 70 473 - -
Gma19g00256 495 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 492 IPR001650 -
Gma19g00256 495 Gene3D - 307 491 IPR027417 -
Gma19g00256 495 PANTHER DEAD-BOX HELICASE DBP80 70 473 - -
Gma19g00256 495 MobiDBLite consensus disorder prediction 1 23 - -
Gma19g00256 495 SMART helicmild6 355 444 IPR001650 -
Gma19g00256 495 MobiDBLite consensus disorder prediction 41 59 - -
Gma19g00256 495 MobiDBLite consensus disorder prediction 1 83 - -
Gma19g00256 495 Pfam DEAD/DEAH box helicase 117 288 IPR011545 GO:0003676|GO:0005524
Gma19g00256 495 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 91 120 IPR014014 GO:0003724
Gma19g00256 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 462 IPR027417 -
Gma19g00256 495 CDD SF2_C_DEAD 313 453 - -
Gma19g00256 495 CDD DEADc_DDX19_DDX25 98 301 - -
Gma19g00256 495 SMART ultradead3 111 316 IPR014001 -
Gma19g00256 495 Pfam Helicase conserved C-terminal domain 326 444 IPR001650 -
Gma19g00256 495 Gene3D - 70 306 IPR027417 -
Gma19g00256 495 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 300 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00256 Gma-Chr19 3470527 3474493 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00256 73 476 Eukaryotic Initiation Factors Gene Family AT3G19760 35.109 4.49e-69 224