Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00232 ATGGCAGCTTTTGTAATAACTGTGTCACAAGATGGAACCGAACAGTGCCGAACGGTGCAGGAAGCCATAGATGCTGTGCCACTCGGCAACACTCGCCGGACGGTGATTCTGACTAAGAACTTCATCACCCTCATTGGCCTGCGCCCTGAGGACACTCTTCTCACTTGGAACAACACTGCCACCTTAATCCACCACCACCAGGATGCTAAGGTGATAGGGACTGGAATCTTTGGTTGTGGCACCATCATTGTGGAAGGGGGGGACTTTATTGCTGAGAATATTACCTTTGAGAATTCTTCCCCTCAGGGTGCAGGGCAAGCAGTAGCAGTTAGAGTAACAGCAGATCGTTGTGCTTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACGTTGTATTTACATTATGGAAAACAATATTTGAAAGATTGTTACATTGAAGGAAGTGTGGACTTCATTTTTGGTAATAGCACTGCACTCTTGGAACATTGTCACATCCACTGCAAGACTGCACAGAGCAGAAACTCTCCACAGGAAAAAACTGGTTATGTATTCCTCAGATATGTTGTCACAGGTAATGGGGGAACTTCATATGCATATCTGGGAAGACCATGGAGACCTTTTGCAAGAGTGGTGTTTGCATTCACTTACATGGATCAATGTATAAAACCTGCTGGCTGGAATAATTGGGGGAAAATTGAGAAAGAAAAAACTGTTAGCTTCTATGAATACAGGTGTTTTGGACCGGGTTTCTCTCCATCCCAACGAGTAAAATGGGCTAGAGAATTACAAGCTGAAGCAGATGAGCATTTTCTCATGCATAGCTTCATTGACCCAGAATCAGAGAGACCTTGGCTTGCTCAAAGAATGGTTTTGAATATTCCATATTCTGCTTAG 894 0.443 MAAFVITVSQDGTEQCRTVQEAIDAVPLGNTRRTVILTKNFITLIGLRPEDTLLTWNNTATLIHHHQDAKVIGTGIFGCGTIIVEGGDFIAENITFENSSPQGAGQAVAVRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKTAQSRNSPQEKTGYVFLRYVVTGNGGTSYAYLGRPWRPFARVVFAFTYMDQCIKPAGWNNWGKIEKEKTVSFYEYRCFGPGFSPSQRVKWARELQAEADEHFLMHSFIDPESERPWLAQRMVLNIPYSA 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00232 297 Pfam Pectinesterase 6 277 IPR000070 GO:0030599|GO:0042545
Gma19g00232 297 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 296 - -
Gma19g00232 297 ProSitePatterns Pectinesterase signature 2. 145 154 IPR033131 -
Gma19g00232 297 SUPERFAMILY Pectin lyase-like 2 284 IPR011050 -
Gma19g00232 297 Gene3D - 3 292 IPR012334 -
Gma19g00232 297 PANTHER PECTINESTERASE 1 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00232 Gma-Chr19 3212788 3221781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00232 6 285 Carbohydrate Esterase AT1G05310 36.306 1.70e-56 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00232 K01051 - gmx:100810259 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00232 19 3212788 3221781 Gma19g00232 19 3212788 3221781 ECH