Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00228 ATGGATGGATCCGCATGTGTGAGAAAAGGCTTATGGAGTGAAGTGGAAGATACCCTTCTCAGGACCTGTGTGCGACAATATGGTGAAGGACAATGGCACTTAGTCCCTACAAGAGCAGGCTTGAACAGGTGCCGCAAGAGCTGCAGATTGCGGTGGTTGAATTATCTAAAGCCAAATATCAAGAGGGGAGAGTTCACTGAGGACGAAGTTGATTTGATGCAAAGATTGCATAATCTTTTGGGAAACAGGTTATGGTCCTTGATTGCTGGAAGACTTCCAGGAAGAACTCCAAATGATGTGAAAAACTACTGGAACACCTACATTCGAAGGAAGGTATCATCATCTCACAAGGTGGTGATCAATGAAAAGCAAAAGAAAACAACAGTGAAGCCTCATGTGGTGATAAAGCCTAAGGCTCGAACTTTCTCAAGACCTTCACCCTCCGGGTTGAGAGGGAGTAGTGTTCTTAGAGAAGAAGGTGGTGAGAGTGGGGCCAAACACTGCTCAACTCATCATCAAGCATGTGCAGCTTCATCAGAGTACATTAATAATTGGAGTACTGATCAGTGGTGGAAAACTATGATGCACGACAAGGGGGACAACTTAGACAACAACCAATGCTTGTTGGGCTACCAGGATGAGGTTGGGAAGCTCGTGAAAGACAATAATTGTGATGAGAATCTTGCTTCCTTGACAACACAAGAAGGAGAGTTTCTTATAGAAGGGCAAAATTGGAGTGATTTTTTTCTTGATACAAATTTGTGA 765 0.4366 MDGSACVRKGLWSEVEDTLLRTCVRQYGEGQWHLVPTRAGLNRCRKSCRLRWLNYLKPNIKRGEFTEDEVDLMQRLHNLLGNRLWSLIAGRLPGRTPNDVKNYWNTYIRRKVSSSHKVVINEKQKKTTVKPHVVIKPKARTFSRPSPSGLRGSSVLREEGGESGAKHCSTHHQACAASSEYINNWSTDQWWKTMMHDKGDNLDNNQCLLGYQDEVGKLVKDNNCDENLASLTTQEGEFLIEGQNWSDFFLDTNL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00228 254 Gene3D - 63 134 - -
Gma19g00228 254 SMART sant 61 110 IPR001005 -
Gma19g00228 254 SMART sant 8 58 IPR001005 -
Gma19g00228 254 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Gma19g00228 254 CDD SANT 12 56 IPR001005 -
Gma19g00228 254 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 164 - -
Gma19g00228 254 Gene3D - 9 61 - -
Gma19g00228 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 112 IPR017930 -
Gma19g00228 254 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Gma19g00228 254 CDD SANT 64 108 IPR001005 -
Gma19g00228 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 60 IPR017930 -
Gma19g00228 254 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 164 - -
Gma19g00228 254 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Gma19g00228 254 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Gma19g00228 254 ProSiteProfiles Myb-like domain profile. 57 108 IPR001005 -
Gma19g00228 254 MobiDBLite consensus disorder prediction 140 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00228 Gma-Chr19 3133703 3136034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00228 7 143 MYB Transcription Factor Family AT1G66370 59.859 1.30e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma19g00228 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00228 - K16166 gmx:100306270 524.628