Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00219 ATGCAAGCAATGGAGAATAACAATTATCAGAGAGAAATAATGGAAGAGCAAAGGTTTGAATTGCCACCAGGATTCAGGTTTCATCCAACAGACGAAGAACTCATCACTCACTACCTCTCACAGAAGGTTCTTGATAGCTGCTTCTGTGCAAGAGCCATTGGAGAGGCTGATTTGAACAAGTGTGAACCATGGGATTTGCCTTGTATGGCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATACCCAACTGGTCAAAGGACTAATAGGGCCACTGGTGCTGGATACTGGAAGGCCACAGGCAAGGACAGAGAGATATACAAGGCAAAGACACTGATTGGAATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCAAGTGGTGAAAAATCTAACTGGGTCATGCATGAATACAGATTAGAAAATGAACATTCTGTGCAAAATCCACCCAAAAAGGCCATGAATGATTGGGCCATCTGCAGGATTTTCCAGAAGAGTAATTGTGGGAAGAAAATGCCCATTTCTAGGTTGTTGAGGTTCAGCACTTTTGCAAAGGACATACCTTCATTGATGGATTCTTCTCCAAACAACAACAACAACAGTGAATCAAAACCTGTTTTGGGGGAGTCATCACATGCAACCTGCTTCTCTGATCCAAACCAAAGTGAGGATAAAAAAACAGAAAACGAAAACATAGCTGAAAGCTATGAAATCATCATGTTGGCATCTTCATATTCTTCAAACCCCTCTGATGTTTCCCCTGACTCATGGACTTTTTCCAAATCTGCCCCTACTGTGTCCCACCAATCACTCCAAGTTGGAAACTCACACTGCTCAGATTACTTCATGCTTCATCAGGAACAGTCCATGTTGGGGATGTTGATTGAAAACCATGGATCAAGTACTGGCCAAAGAACTCAGAAAGCTCAGGATAATAATAAAGACTTTGATGCTGACATGTCCTCGGTGATGTACAACAACAATGAAATGTTTCAAAGATCATTTGGGAACCAGGAATATTCATCACCTTCTGTAGGACATGTGTATTCTAGTGGCCTATGGGGATTTTAA 1089 0.416 MQAMENNNYQREIMEEQRFELPPGFRFHPTDEELITHYLSQKVLDSCFCARAIGEADLNKCEPWDLPCMAKMGEKEWYFFCVRDRKYPTGQRTNRATGAGYWKATGKDREIYKAKTLIGMKKTLVFYKGRAPSGEKSNWVMHEYRLENEHSVQNPPKKAMNDWAICRIFQKSNCGKKMPISRLLRFSTFAKDIPSLMDSSPNNNNNSESKPVLGESSHATCFSDPNQSEDKKTENENIAESYEIIMLASSYSSNPSDVSPDSWTFSKSAPTVSHQSLQVGNSHCSDYFMLHQEQSMLGMLIENHGSSTGQRTQKAQDNNKDFDADMSSVMYNNNEMFQRSFGNQEYSSPSVGHVYSSGLWGF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00219 362 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 327 - -
Gma19g00219 362 Pfam No apical meristem (NAM) protein 22 146 IPR003441 GO:0003677|GO:0006355
Gma19g00219 362 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
Gma19g00219 362 SUPERFAMILY NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
Gma19g00219 362 MobiDBLite consensus disorder prediction 195 224 - -
Gma19g00219 362 MobiDBLite consensus disorder prediction 195 235 - -
Gma19g00219 362 PANTHER NAC DOMAIN-CONTAINING PROTEIN 92-LIKE 14 327 - -
Gma19g00219 362 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00219 Gma-Chr19 2905005 2906954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00219 20 362 NAC Transcription Factor Family AT5G07680 50.144 1.69e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma19g00219 NAM 7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00219 - - gmx:100785620 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00219 19 2905005 2906954 Gma19g00219 19 2905005 2906954 ECH
Gma19g00219 19 2905005 2906954 Gma09g02166 09 47112063 47113858 PCT
Gma09g02166 09 47112063 47113858 Gma19g00219 19 2905005 2906954 PCT