Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00216 ATGTGCAACTTCATGAAAAAAATGGTTCATCTTGGCTTCTTCCTTCTGGGGTGTCTCTCCATGATCTCATATGCTAATGGTTATGTCAGCAATGGGGGTTGGACCAATGCCCATGCTACATTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGTTATGGAAACTTGTATAGTCAAGGATATGGGACTAACACAGCAGCACTTAGCACTGCCTTGTTCAACAATGGCTTGAGTTGTGGCTCATGCTACCAAATCAAATGTGCAAATGACCCACAATGGTGCCTCCGTGGCACCATTGTAGTCACTGCCACTAATTTCTGCCCCCCTGGTGGATGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTGTTTCAGCAAATTGCCCAATACAGAGCTGGTATTGTGCCTGTAGTTTACAGAAGGGTACGGTGCATGAGAAGAGGTGGAATCAGGTTCACCATCAATGGTCATTCATACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATTCTGTGGCCATAAAAGGTTCAAGAACCAGATGGCAACCCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAACTCCTACCTTAATGGACAGAGTCTTTCCTTTTTGGTCACCACTAGTGATGGTCGCAGTGTGCTCTCATACAATGCTGCACCACCAAGTTGGTCCTTTGGACAGACCTACACTGGAAGGCAATTCCGCTACTAA 753 0.4661 MCNFMKKMVHLGFFLLGCLSMISYANGYVSNGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYQIKCANDPQWCLRGTIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYRAGIVPVVYRRVRCMRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSVLSYNAAPPSWSFGQTYTGRQFRY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00216 250 SMART dpbb_1 69 146 IPR007112 -
Gma19g00216 250 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Gma19g00216 250 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Gma19g00216 250 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Gma19g00216 250 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Gma19g00216 250 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Gma19g00216 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Gma19g00216 250 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Gma19g00216 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 156 IPR007112 -
Gma19g00216 250 Gene3D - 22 151 IPR036908 -
Gma19g00216 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Gma19g00216 250 PANTHER EXPANSIN 10 249 - -
Gma19g00216 250 Gene3D - 156 248 IPR036749 -
Gma19g00216 250 Pfam Lytic transglycolase 69 146 IPR009009 -
Gma19g00216 250 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Gma19g00216 250 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Gma19g00216 250 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Gma19g00216 250 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Gma19g00216 250 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Gma19g00216 250 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Gma19g00216 250 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Gma19g00216 250 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Gma19g00216 250 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Gma19g00216 250 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Gma19g00216 250 PANTHER EXPANSIN-A15 10 249 IPR002963 GO:0009664
Gma19g00216 250 SUPERFAMILY Barwin-like endoglucanases 33 174 IPR036908 -
Gma19g00216 250 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00216 Gma-Chr19 2784944 2787319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00216 4 249 Expansin Gene Family AT2G03090 77.165 8.76e-142 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00216 - K20628 gmx:100799370 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00216 19 2784944 2787319 Gma06g01752 06 17836215 17838699 ECH
Gma19g00216 19 2784944 2787319 Gma04g01631 04 44363370 44366477 ECH
Gma19g00216 19 2784944 2787319 Gma17g00953 17 8120474 8123768 ECH
Gma19g00216 19 2784944 2787319 Gma19g00216 19 2784944 2787319 ECH
Gma02g00998 02 10683705 10686005 Gma19g00216 19 2784944 2787319 ECH
Gma01g00461 01 5991245 5993454 Gma19g00216 19 2784944 2787319 ECH