Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00198 ATGGAGATAATAACACCAGTACCAGCAACAGCAACAACAACAGCCAAAAACGCAACCGCGAAATCGCCAGAACCCGACGTAGAGACGCCGACCCGGATCCACCAAAACCCGAACCTGAATCCAAAGCCGGTGTCTTTCTCCAACGGCGTCTTGAAGCGCCACCATGCAAACCACCGCCCCAACGCGGTGGTTTACAAGGAATGCTTGAAGAACCACGTGGCGAGCTTGGGTGGCCACGCTTTGGACGGCTGCGGCGAGTTCATGCCGTCGCCGGCGGCCACCGCCGACGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCGCCGCGAACCGGAGGAGACACCCATTTCTCCGGCGACGCACCATGTTCTAGAGTACCAGCCCCACCACCGCCATCACCCTCCTCCGCCGGCCCCGTCGCACCGGAGTccgaactccgcctccccgccgccgatctcctcctacccctccgccCCCCACATGCTCCTCGCCCTCTCCGGCGGCGGTGGCTTCTCCGTCGCGCGGGAAAACACCGGCGCGCCGGCGCCGGCGCACAACCACTCGCGTAAACGCTTCCGAACGAAGTTCACCCAAGAACAAAAGGAGAAGATGCATGAGTTCGCCGACAAAGTTGGGTGGAAGATGCAGAAGCGCGACGATGAAATGGTTATGGAGTTCTGCAACGAGATTGGCGTCGAAAGAGGGGTTCTCAAAGTGTGGATGCACAACAACAAGAACACTCTCGCGAAAAAAGACAACCTTAACAACGGTAACGGTAGCACTCTGAGTGTCAGCGCCAACGGGATTTCTCTGGATGGCGCTGTTGGGAGTGCCACCGTTAGAACCGGTGTTCATGTCCCCGAACATGGACATGAACACAGCGGAATTAATGGTAACGGTAGCGGCGACAACAACCACAACCACAATCTCGCTTCCCATGATGTGAACGAGTACGAGAATGATAGTGGGACTAACGGGGGTGGTACTAATGGGTCTTCTTCTTCTTCTTGA 1029 0.55 MEIITPVPATATTTAKNATAKSPEPDVETPTRIHQNPNLNPKPVSFSNGVLKRHHANHRPNAVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEETPISPATHHVLEYQPHHRHHPPPPAPSHRSPNSASPPPISSYPSAPHMLLALSGGGGFSVARENTGAPAPAHNHSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDDEMVMEFCNEIGVERGVLKVWMHNNKNTLAKKDNLNNGNGSTLSVSANGISLDGAVGSATVRTGVHVPEHGHEHSGINGNGSGDNNHNHNLASHDVNEYENDSGTNGGGTNGSSSSS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00198 342 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 4 279 - -
Gma19g00198 342 MobiDBLite consensus disorder prediction 1 42 - -
Gma19g00198 342 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 195 252 IPR006455 -
Gma19g00198 342 Pfam ZF-HD protein dimerisation region 63 117 IPR006456 -
Gma19g00198 342 Gene3D - 180 257 - -
Gma19g00198 342 MobiDBLite consensus disorder prediction 133 165 - -
Gma19g00198 342 MobiDBLite consensus disorder prediction 322 342 - -
Gma19g00198 342 MobiDBLite consensus disorder prediction 293 342 - -
Gma19g00198 342 SUPERFAMILY Homeodomain-like 184 256 IPR009057 -
Gma19g00198 342 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 65 116 IPR006456 -
Gma19g00198 342 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 65 116 IPR006456 -
Gma19g00198 342 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 279 - -
Gma19g00198 342 MobiDBLite consensus disorder prediction 144 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00198 Gma-Chr19 2531998 2533613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00198 9 251 ZF-HD Transcription Factor Family AT5G15210 52.590 2.53e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma19g00198 ZF-HD_dimer 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00198 - - gmx:100814730 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00462 13 16859098 16860021 Gma19g00198 19 2531998 2533613 GST
Gma19g00198 19 2531998 2533613 Gma18g02369 18 57808294 57810009 PCT
Gma19g00198 19 2531998 2533613 Gma09g02187 09 47341864 47342862 PCT
Gma18g02369 18 57808294 57810009 Gma19g00198 19 2531998 2533613 PCT
Gma09g02187 09 47341864 47342862 Gma19g00198 19 2531998 2533613 PCT