Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00195 ATGGGAAGGCCACCATGTTGTGATAAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGACATCATTTTGGTGTCTTATATTCAGGAACATGGTCCTGGCAATTGGAAAGCTGTTCCTGCCAATACTGGGTTGTCAAGGTGCAGTAAGAGTTGTAGACTTAGATGGACTAATTACCTGAGGCCAGGAATCAAAAGGGGTAACTTCACAGACCAAGAGGAGAAGATGATTATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCAATAGCTGCTTACCTACCACAAAGAACAGATAATGACATAAAAAACTATTGGAACACATATTTGAAAAAGAAGCTGAACAAAAAATTGGAAGCAGGTTCTGATCAAGGAAGCTTGTTGGGAGGAGGACATAATAATATTGGGTTTTCATCAGTTTCTCAACCAATGTCTAGAGGCCAGTGGGAAAGAAGGCTTCAAACAGATATTCACATGGCCAAAAAAGCACTTAGTGAAGCACTCTCACCAAACAAGGCATCATCATCATCATCAACCTTGTTAGCTGAATCAAATTCAAACCTCTCCAATGAAAATAGTACCTTCTATAATAGTAACACTAATAAACCAACAACAACACAATCTATGTGCTATGCTTCAAGTGCTGATAACATAGCTCGTTTGTTGAAAGGGTGGATGAAAAACACACCAAAATCAGCCTCATGTGCTGCCTCGGCTGTGACTCAAAATTCCTGTTCTTCTAGTGAAGGAATTACAACAACAAAGGGAAGCACAACAAGCACTAGTACTGTTGAATTGTCTGAGACTTTTGAGTCCTTGTTTGGTTATGAGTCTTTCGATAATTACTCTTCAAATTCTGAGTTCTCACCATCTCTTTCTCCTGAGGCTACTCTTTTCCAAGATGAGGGCAAGCCAGATATAACTACAGGATTAATAGACATGCCTTTCTCTTTGTTTGAGAAATGGCTTCTAGATGTTGATGCTGGTAGTCAAGAGAAACTTGGCTTCTAG 1014 0.4014 MGRPPCCDKGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPANTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKKLEAGSDQGSLLGGGHNNIGFSSVSQPMSRGQWERRLQTDIHMAKKALSEALSPNKASSSSSTLLAESNSNLSNENSTFYNSNTNKPTTTQSMCYASSADNIARLLKGWMKNTPKSASCAASAVTQNSCSSSEGITTTKGSTTSTSTVELSETFESLFGYESFDNYSSNSEFSPSLSPEATLFQDEGKPDITTGLIDMPFSLFEKWLLDVDAGSQEKLGF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00195 337 Gene3D - 68 127 - -
Gma19g00195 337 Gene3D - 12 65 - -
Gma19g00195 337 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gma19g00195 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Gma19g00195 337 SMART sant 12 62 IPR001005 -
Gma19g00195 337 SMART sant 65 113 IPR001005 -
Gma19g00195 337 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gma19g00195 337 CDD SANT 15 60 IPR001005 -
Gma19g00195 337 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gma19g00195 337 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Gma19g00195 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Gma19g00195 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 334 - -
Gma19g00195 337 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Gma19g00195 337 CDD SANT 68 110 IPR001005 -
Gma19g00195 337 MobiDBLite consensus disorder prediction 166 185 - -
Gma19g00195 337 MobiDBLite consensus disorder prediction 169 185 - -
Gma19g00195 337 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00195 Gma-Chr19 2474702 2476609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00195 1 337 MYB Transcription Factor Family AT5G62470 51.507 1.25e-107 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma19g00195 Myb_DNA-binding 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00195 K09422 - gmx:778078 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00463 13 16919054 16920379 Gma19g00195 19 2474702 2476609 GST
Gma19g00195 19 2474702 2476609 Gma18g02367 18 57773473 57775155 PCT
Gma19g00195 19 2474702 2476609 Gma09g02190 09 47375727 47377396 PCT
Gma18g02367 18 57773473 57775155 Gma19g00195 19 2474702 2476609 PCT
Gma09g02190 09 47375727 47377396 Gma19g00195 19 2474702 2476609 PCT