Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00188 ATGTCTAGCAGAAGGTCCAGGCAGCAATCTGCATCCACAAGGATCTCCGATGACCAAATCATCGACCTCGTTTCAAAGTTGCGTCAACTTGTTCCTGAGATTCGCGATAGGCGCTCTGACAAGGTATCAGCATCTAAGGTCCTACAAGAGACCTGCAACTACATCAGAAGCTTACACAGAGAAGTGGATGACTTAAGCGAACGACTGTCTCAGTTGTTGGCCACAATCGATGCTGATAGCCCTGAAGCTGCCATCATTAGGAGCCTAATTAACTAA 276 0.471 MSSRRSRQQSASTRISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSQLLATIDADSPEAAIIRSLIN 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00188 91 Coils Coil 55 75 - -
Gma19g00188 91 Pfam Helix-loop-helix DNA-binding domain 19 59 IPR011598 GO:0046983
Gma19g00188 91 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Gma19g00188 91 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 78 IPR036638 GO:0046983
Gma19g00188 91 Gene3D - 2 83 IPR036638 GO:0046983
Gma19g00188 91 CDD bHLH_AtPRE_like 9 75 - -
Gma19g00188 91 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Gma19g00188 91 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00188 Gma-Chr19 2306892 2310132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00188 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 76.250 7.64e-38 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma19g00188 HLH 2.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00188 - - gmx:100794486 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00188 19 2306892 2310132 Gma06g01712 06 17282371 17284398 ECH
Gma19g00188 19 2306892 2310132 Gma04g01671 04 45393776 45395428 ECH
Gma19g00188 19 2306892 2310132 Gma19g00188 19 2306892 2310132 ECH
Gma02g00181 02 1682233 1683493 Gma19g00188 19 2306892 2310132 ECH
Gma01g00411 01 5058729 5063583 Gma19g00188 19 2306892 2310132 ECH
Gma08g02807 08 44180771 44182345 Gma19g00188 19 2306892 2310132 ECH
Gma18g01105 18 15718302 15718903 Gma19g00188 19 2306892 2310132 ECH
Gma13g00470 13 17063921 17065949 Gma19g00188 19 2306892 2310132 GST