Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00186 ATGGCTTTTCCTCCTTCTCACACCTTCATGTTCCAAACCCATGAAGATCATGATCCCCACCAGCTCCATCTGCGTTCAACTTCAACCTCTCTCAACGCTTTCCCCTCTTTCCCACCTCATCACTTTCAAGGTGCAGGAGGTTTAATGATGAAGCGTTCGATGTCGTTTTCCGGCATAGACAACAACAACAACAACAACAAGTGCGATGAATCGCACGGGGACGACGAGTTATCGGACGAGGGATCTCAGCTCCTAGGGGAGAAGAAGAAGAGGCTGAGTCTGGAGCAGGTGAAGGCGCTGGAGAAGAGCTTCGAGCTCGGGAACAAGCTCGAACCAGAGAGGAAAATGCAGCTGGCCAAAGCCCTAGGGCTTCAGCCGAGGCAGATAGCGATATGGTTTCAGAACAGAAGAGCTAGGTGGAAGACTAAGCAGCTTGAGAAGGAGTATGAAGTTCTCAAGAAACAGTTTGAAGCTGTTAAGGCCGATAATGACTCCCTCAAGTCCCAGAACCAGAAACTACATACAGAGTTACAAACTCTAAAAAGAAGGGACTGCAATGAAACTGGAACTGTAATTAGTCTCAAGAAAGAAACTGATCAGGGTTCTTGGAGCAATGGCAGCAACAACAGTTCAGAGATCAATTTGGATCTCTCAAGAACACCAGTGATGAACACTAGTCCTGTGTCTTCTCAGAATGGAAAATCCCTTTTACCAACAACTTCTTCTAAGCCTACAAGCATAACTCAACTCCTCCAATGCTCATCAAGACCAGATCTCCAAGATGAGAGCTTCTGCAACATGTTCCACATCATTGATGAGCAGCAGAATTTTTGGCCCTGGCCTGATCATCAGCAGCAGCAGCAACACCAGTTTCATTAA 879 0.4676 MAFPPSHTFMFQTHEDHDPHQLHLRSTSTSLNAFPSFPPHHFQGAGGLMMKRSMSFSGIDNNNNNNKCDESHGDDELSDEGSQLLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKSQNQKLHTELQTLKRRDCNETGTVISLKKETDQGSWSNGSNNSSEINLDLSRTPVMNTSPVSSQNGKSLLPTTSSKPTSITQLLQCSSRPDLQDESFCNMFHIIDEQQNFWPWPDHQQQQQHQFH 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00186 292 ProSitePatterns 'Homeobox' domain signature. 118 141 IPR017970 GO:0000981|GO:0006355
Gma19g00186 292 Coils Coil 135 183 - -
Gma19g00186 292 CDD homeodomain 88 144 IPR001356 GO:0003677
Gma19g00186 292 MobiDBLite consensus disorder prediction 56 80 - -
Gma19g00186 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 292 IPR045224 GO:0003700
Gma19g00186 292 SMART HOX_1 86 147 IPR001356 GO:0003677
Gma19g00186 292 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 292 - -
Gma19g00186 292 Pfam Homeobox associated leucine zipper 143 182 IPR003106 GO:0006355|GO:0043565
Gma19g00186 292 Gene3D - 82 158 - -
Gma19g00186 292 PRINTS Lambda-repressor HTH signature 114 123 IPR000047 GO:0003677
Gma19g00186 292 PRINTS Lambda-repressor HTH signature 123 139 IPR000047 GO:0003677
Gma19g00186 292 MobiDBLite consensus disorder prediction 224 243 - -
Gma19g00186 292 Pfam Homeodomain 88 141 IPR001356 GO:0003677
Gma19g00186 292 ProSiteProfiles 'Homeobox' domain profile. 87 143 IPR001356 GO:0003677
Gma19g00186 292 SUPERFAMILY Homeodomain-like 87 145 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00186 Gma-Chr19 2259995 2263829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00186 1 282 Homeobox Transcription Factor Family AT5G15150 51.342 5.15e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma19g00186 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00186 K09338 - gmx:100816097 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00186 19 2259995 2263829 Gma19g00186 19 2259995 2263829 ECH
Gma13g00471 13 17091196 17094065 Gma19g00186 19 2259995 2263829 GST
Gma19g00186 19 2259995 2263829 Gma18g02361 18 57688572 57691294 PCT
Gma19g00186 19 2259995 2263829 Gma09g02195 09 47463056 47465180 PCT
Gma18g02361 18 57688572 57691294 Gma19g00186 19 2259995 2263829 PCT
Gma09g02195 09 47463056 47465180 Gma19g00186 19 2259995 2263829 PCT