Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00181 ATGGAGGCCATGTTAAAATTGTCTAGTCTTTGTGGTCAAGAGATAGATGATAAGAGAGATACTTCCATTTGCTCAGAAGAGGACTTGTGTATTGAAAAGGGTAGTAAGGAAGATAAACTTGAATCTGCTAAAGCTGAGATGAGTAAGGTGAAGGAGGAGAATGAAAGATTGAAGATGATGATAGAAAGAGTAGGAAAGAATTACCATTCTCTTCAACTTCGTTTCTTTGACATCCTTCATAGAGAAACTTCAAACAAAGGTGTGGAAGATTCAGCTGTTTCCCTTGATGAAGTGGAGGAACCTAAGCTTGTGTCACTTTGTCTTGGAACAAGTCCATGGGAGCATAAAAAGGATGGAATAATCTGTAACTCTAGCAAACATAAAGAAAATGAAGATTTGGAAGCCAGCCTTACCCTTGGTTTAGACTGCAAAGGTGTGTCTTCAAAGGAACAGGTATCTGATATGAACACCTCAGAAGAAAAGGAAGAAGATTCAACAAATAAATTAGTAAGGACCAAAGATGGAGGTGATGAAATTTCAGAGATAACACCCCCAGCCAAGAGGGCTAGAGTTTGTGTCAGAGCAAGATGTGATAGTCCCGTTATGCATGATGGATGCCAGTGGAGGAAATATGGACAGAAGATAGCAAAAGGAAATCCATGTCCAAGAGCATACTATCGTTGCACACTTGCTCCAGCATGCCCGGTTAGGAAACAGGTGCAAAGATGTGCTGATGACATGTCCATCTTAATCACCACATATGAAGGAACTCACAACCACCCAATTCCAGCTTCAGCCACAGCCATGGCTTCCACCACTTCTGCTGCTGTTTCCATGTTGTTGTCAGGCTCTTCAACATCTCAGCCTACAGATCACAGTTTTGCCTATCATGCAAATTCTCCTACACTGTTCAGTGGTGTCAATTTCAGTCTTTTAGACCAACCAAGAGCAAACCAAGTCTTGTTACCAACCCCTTCCTCACATTTACTCCCAACAATCACTCTAGACCTTACTTCTACTCCATCCTATTCATTAAATCAAGGGAATTGTTTACCATCAAACTTTGCTTCAACCCCAAGATTCCCTCCATTAAGTCTAAACTTTTGGTCCCCAGAGTCCAACATTCCACTATCCTTTTGGGGCAAGGGAATTCCTAACAATGGCACTATTCCTATTGACAAAACTCACATCAAGCCATTCAATATAGGAAACCAATTTCAAGAACATTTCTACCAACATTACTTCAAGAACCAAACTCCATTCAGGGAGGCTTTGGCAGAAACACTAACCAAAGCAATCAGCACAGACACGAGTTTTCGGTCAGCGATAGCTGCTGCAGTTTCATCTATAAGGGGACAAGGATCAAGCAGTGAGAACAAGGGTGATGGAGAGGTTTTAGGTTCAGGATTGAGCTTGAAACTTGGGGAGCATCCTCAACTTGCTTCTTCCAATTCCTTGAACAAGAATGAGAAAGAATGCTTAACAGGCTACTTCAACAGATCATCATCTTCATCTTCAAGTTCTCAGGGTGGAAACTCAATGCTTCTCCAACCTCAATGGCCATTTTCTATTCGCAAGACTAGCACACCTCCTTCCAATGTTGATTACATCAACCATTGGATTTCAGAAATCAATTCTCATCATTAG 1647 0.4141 MEAMLKLSSLCGQEIDDKRDTSICSEEDLCIEKGSKEDKLESAKAEMSKVKEENERLKMMIERVGKNYHSLQLRFFDILHRETSNKGVEDSAVSLDEVEEPKLVSLCLGTSPWEHKKDGIICNSSKHKENEDLEASLTLGLDCKGVSSKEQVSDMNTSEEKEEDSTNKLVRTKDGGDEISEITPPAKRARVCVRARCDSPVMHDGCQWRKYGQKIAKGNPCPRAYYRCTLAPACPVRKQVQRCADDMSILITTYEGTHNHPIPASATAMASTTSAAVSMLLSGSSTSQPTDHSFAYHANSPTLFSGVNFSLLDQPRANQVLLPTPSSHLLPTITLDLTSTPSYSLNQGNCLPSNFASTPRFPPLSLNFWSPESNIPLSFWGKGIPNNGTIPIDKTHIKPFNIGNQFQEHFYQHYFKNQTPFREALAETLTKAISTDTSFRSAIAAAVSSIRGQGSSSENKGDGEVLGSGLSLKLGEHPQLASSNSLNKNEKECLTGYFNRSSSSSSSSQGGNSMLLQPQWPFSIRKTSTPPSNVDYINHWISEINSHH 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00181 548 SUPERFAMILY WRKY DNA-binding domain 195 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma19g00181 548 SMART WRKY_cls 202 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma19g00181 548 Coils Coil 33 67 - -
Gma19g00181 548 Gene3D WRKY domain 187 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gma19g00181 548 ProSiteProfiles WRKY domain profile. 197 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma19g00181 548 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 35 532 - -
Gma19g00181 548 Pfam WRKY DNA -binding domain 204 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gma19g00181 548 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 35 532 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00181 Gma-Chr19 2218178 2221556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00181 47 526 WRKY Transcription Factor Family AT5G15130 39.850 4.01e-82 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gma19g00181 WRKY 8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00181 - - gmx:100819296 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00181 19 2218178 2221556 Gma06g01704 06 17151477 17156609 ECH
Gma19g00181 19 2218178 2221556 Gma04g01680 04 45770569 45776711 ECH
Gma19g00181 19 2218178 2221556 Gma05g00281 05 2533087 2538635 ECH
Gma19g00181 19 2218178 2221556 Gma17g00922 17 7867378 7873082 ECH
Gma19g00181 19 2218178 2221556 Gma19g00181 19 2218178 2221556 ECH
Gma02g00196 02 1870808 1877287 Gma19g00181 19 2218178 2221556 ECH
Gma01g00390 01 4785070 4790972 Gma19g00181 19 2218178 2221556 ECH
Gma18g01118 18 16214826 16219400 Gma19g00181 19 2218178 2221556 ECH