Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00177 ATGGTTGGAAGTGCAACAAAGGTTGCTTTCAACCTCTTGGTCACTTTCGCCATTGTCATTCCATGCCTTGAGGCTGGCATTGCTGAGTTTGATGACTTTCTCAAAGCCCAAGCTGATGAAGCACAAAAAATTGCTCTTGAGGCCTATGTCCCAGTGCCAGAAGATGTCACCGACGAACTCAATTTCCATGTTCATTTGTCATTAGAAAACTCCACAAGGAGGGAACTAAGGCAAAGGAAGGGTAGATCAGGAAAAAAATGTGTTGCCAGCAACCCTATTGACACTTGCTGGAGATGCAACAAAAACTGGGCCAATGACCGGTACAGGTTAGCCAAGTGCGGCAAAGGGTTCGGAAGACGGGCCACCGGTGGTCTCGGTGGCCCCATCTATGTCGTCACCGATAATTCCGATGACGACATGGTGAACCCTAAGCCAGGAACCATCCGTCACGCCGTGACCCAACGGGGCCCCTTGTGGATCATCTTCCAACGCAGCATGATGATCAAATTGAATCAAGAGCTGATGATTTCCTCCGACAAGACCATCGACGGTCGCGGCGCCAACGTGGTGTTTAGGGACGGCGCTGGCCTCACCATTCAGTTCGTGAACAACGTTATCATCCACGGAGTTCGCATCAAGAACATCGTACCTAAGGAGGGTGGCATGATTAGAGACTCTTACAACCATGTTGGCCTGAGAACAAAGAGTGATGGTGATGCCATCTCCATTTTCGGAGCCAGCAACGTTTGGATCGATCATGTTTCCCTCTCTAACTGTGCTGATGGTCTTATCGACGTCATCCAGGGCTCCACTGCCATCACCATCTCAAATTGCCACATGACCAAACATAACGATGTCATGCTGTTTGGTGCTAGTGACTCATACAGCGGAGACAAGATAATGCAGATAACAGTGGCATTCAACCACTTCGGGCAAGGACTGGTTCAGAGGATGCCAAGGTGCAGATGGGGTTTCGTGCATGTCCTCAACAATGACTACACCCACTGGATGATGTACGCAATTGGTGGAAGCTCAGGGCCAACAATTCTGAGCCAAGGAAACCGTTTCATAGCTCCGAACAACAACGCCGCGAAGCTGATCACACACAGGGACTATGCTGAACCCCAAGTGTGGAAGAATTGGCAGTGGCAATCAGAAATGGACTTGTTCATAAACGGTGCACAGTTCATCCCTTCAGGCTCACCCATCAAGACGACCTACAAAAAGGGTCTCCTCATGAAGCCAAGAGATGGAACTCATGCTAGTAGATTGACACGAAATTCCGGTGCCCTAAACTGCATAGTTGGTAGGCCTTGTTAG 1320 0.4947 MVGSATKVAFNLLVTFAIVIPCLEAGIAEFDDFLKAQADEAQKIALEAYVPVPEDVTDELNFHVHLSLENSTRRELRQRKGRSGKKCVASNPIDTCWRCNKNWANDRYRLAKCGKGFGRRATGGLGGPIYVVTDNSDDDMVNPKPGTIRHAVTQRGPLWIIFQRSMMIKLNQELMISSDKTIDGRGANVVFRDGAGLTIQFVNNVIIHGVRIKNIVPKEGGMIRDSYNHVGLRTKSDGDAISIFGASNVWIDHVSLSNCADGLIDVIQGSTAITISNCHMTKHNDVMLFGASDSYSGDKIMQITVAFNHFGQGLVQRMPRCRWGFVHVLNNDYTHWMMYAIGGSSGPTILSQGNRFIAPNNNAAKLITHRDYAEPQVWKNWQWQSEMDLFINGAQFIPSGSPIKTTYKKGLLMKPRDGTHASRLTRNSGALNCIVGRPC 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00177 439 PANTHER PECTATE LYASE 18-RELATED 5 439 IPR045032 GO:0030570
Gma19g00177 439 PANTHER PECTATE LYASE 5 439 - -
Gma19g00177 439 SUPERFAMILY Pectin lyase-like 91 407 IPR011050 -
Gma19g00177 439 Pfam Pectate lyase, N terminus 27 76 IPR007524 GO:0030570
Gma19g00177 439 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Gma19g00177 439 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Gma19g00177 439 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Gma19g00177 439 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Gma19g00177 439 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Gma19g00177 439 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Gma19g00177 439 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Gma19g00177 439 PRINTS Pollen allergen Amb family signature 410 433 IPR018082 -
Gma19g00177 439 Pfam Pectate lyase 172 356 IPR002022 -
Gma19g00177 439 Gene3D - 90 432 IPR012334 -
Gma19g00177 439 SMART amb_all 165 362 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00177 Gma-Chr19 2144695 2146579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00177 16 439 Polysaccharide Lyase AT1G14420 59.091 0.0 535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00177 19 2144695 2146579 Gma04g01682 04 45839753 45842428 ECH
Gma19g00177 19 2144695 2146579 Gma19g00177 19 2144695 2146579 ECH
Gma02g00199 02 1904489 1907206 Gma19g00177 19 2144695 2146579 ECH
Gma08g02790 08 43865484 43869134 Gma19g00177 19 2144695 2146579 ECH
Gma13g00481 13 17185723 17187958 Gma19g00177 19 2144695 2146579 GST