Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00174 ATGGGGTTTGGGAGTAATGCAGTTCAAGCAGGGAGTTTGGATGTGGACAAGTCAAATGAAAGGAAGAAGGTAGAAGGTGCTGGAAAGGAGAGAAAATGGTGGTTTAGATTTAGCTTCTTTGGGAGCTGCATACCTTCAGGATCAAAAGTTGATAGCACCATAAGTGGCACTAAGGCCCATAATGGTGAAAATGTCAAATCAGTGATAGTTGGATCAGAGGAAAACAAATCTGCATCTGATAAAATCACAAAGGAAACTGTTGCTACTGAAGAGTCCTCTACAACAGCTAGCGATGCGGAAAGTAACCCTTCCACACCAAAATTCAGTGAGGAGTTGAAGTTTGCTTCTTGTATGAGAAAATTCACATTCAATGGACTTAAGGTGGCAACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTCTTCAAGGGTTGGATCGAGGAAAATGGAACTGCACCTGTGAAACCAGGTACTGGACTCACGGTTGCGGTCAAGACTCTTAACCACAATGGACATCAGGGTCACAAAGAGTGGCTTGCTGAATTAAATTATCTTGGTGATCTTGTCCATCCTAATCTTGTTAAGTTGATTGGTTTCTGTATTGAAGATGACCAAAGATTACTGGTTTATGAGTTTATGCCCCGAGGCAGTTTGGAGAACCACCTCTTTAGAAGGCCCCTGCCTCTTCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCAGCCAAAGGTCTTGCTTTTCTCCATGAAGAGGCTCAGAGGCCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGGAATACAATGCCAAGCTTTCTGATTTTGGACTTGCCAAAGATGGTCCTGAGGGGGAGAAGACACATGTATCTACAAGAGTTATGGGAACATATGGTTATGCTGCTCCTGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTATACAGCTTTGGAGTAGTGCTACTTGAAATGCTCACAGGCCGGCGATCCATTGATAAGAAAAGACCAAATGGGGAACACAATCTGGTAGAGTGGGCTAGACCTGTACTGGGAGACCGGAGGATGTTCTACCGGATAATCGATCCCCGCCTTGAAGGCCACTTCTCGGTCAAAGGGGCGCAGAAAGCTGCCCTGCTGGCTGCTCAATGCCTTAGCCGTGATCCAAAATCTAGACCCTTGATGAGTGAAGTTGTTCGAGCTTTAAAGCCTCTGCCAAGCCTCAAGGACATGGCAATCTCATCTTATCACTTCCAGATTGCGCGCGTAGATCGAACCATGTCCATGCCGAATCATAAAAACGGTATTAGAACACAGTTAGTATCTGTGCCAAGGAAGGGTCAACCTGTAAGGACATTGTCTAGTCCAAATGTTCCACATGGTTCTCCATACCTTCATCATACCAAGTCTCCAAAACCTATTGGGTAA 1461 0.4428 MGFGSNAVQAGSLDVDKSNERKKVEGAGKERKWWFRFSFFGSCIPSGSKVDSTISGTKAHNGENVKSVIVGSEENKSASDKITKETVATEESSTTASDAESNPSTPKFSEELKFASCMRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHNGHQGHKEWLAELNYLGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEEAQRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKKRPNGEHNLVEWARPVLGDRRMFYRIIDPRLEGHFSVKGAQKAALLAAQCLSRDPKSRPLMSEVVRALKPLPSLKDMAISSYHFQIARVDRTMSMPNHKNGIRTQLVSVPRKGQPVRTLSSPNVPHGSPYLHHTKSPKPIG 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00174 486 PANTHER OS01G0588500 PROTEIN-RELATED 63 478 - -
Gma19g00174 486 MobiDBLite consensus disorder prediction 1 27 - -
Gma19g00174 486 ProSitePatterns Protein kinases ATP-binding region signature. 139 171 IPR017441 GO:0005524
Gma19g00174 486 ProSiteProfiles Protein kinase domain profile. 133 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g00174 486 MobiDBLite consensus disorder prediction 67 107 - -
Gma19g00174 486 Gene3D Transferase(Phosphotransferase) domain 1 219 432 - -
Gma19g00174 486 SUPERFAMILY Protein kinase-like (PK-like) 107 413 IPR011009 -
Gma19g00174 486 Gene3D Phosphorylase Kinase; domain 1 117 218 - -
Gma19g00174 486 Pfam Protein kinase domain 136 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma19g00174 486 MobiDBLite consensus disorder prediction 88 107 - -
Gma19g00174 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Gma19g00174 486 MobiDBLite consensus disorder prediction 449 486 - -
Gma19g00174 486 PANTHER RECEPTOR-LIKE KINASE PLANT 63 478 - -
Gma19g00174 486 CDD STKc_IRAK 139 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00174 Gma-Chr19 2110379 2115277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00174 119 429 Glycoside Hydrolase AT3G07070 56.051 2.68e-116 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma19g00174 Pkinase 6.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00174 - - gmx:100499647 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00174 19 2110379 2115277 Gma18g02335 18 57462043 57468590 PCT
Gma19g00174 19 2110379 2115277 Gma09g02208 09 47574458 47578243 PCT
Gma18g02335 18 57462043 57468590 Gma19g00174 19 2110379 2115277 PCT
Gma09g02208 09 47574458 47578243 Gma19g00174 19 2110379 2115277 PCT