Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00142 ATGAGTGGTGATCATAACAGTTCTGTTTCCATGGTTGGGAAGAAGAAAAAGAATGGCTCTCTTCGGTCTATTTTCATGCATGCTGATGGCTTAGACTGGTTCCTCATGATTTTTGGTCTCTTTGGGGCCATTGGTGATGGCATAGGCACCCCTTTGGTGTTGTTTATCACCAGCAAAATTATGAACAATATTGGTGGTTTTTCTAGCAACATAGGCAGCACTTTCATCCACAGCATCAATGAGAATGCCGTGGTTTTGTTATATTTGGCTGGTGGGTCTTTCATTGCTTGTTTCCTAGAGGGTTATTGTTGGACAAGAACAGGAGAAAGGCAAGCTGCAAGAATGAGAGTTAGGTACCTTAAAGCAGTTCTCAGGCAAGAAGTAGCATACTTTGATTTGCATGTCACAAGCACATCGGAGGTCATCACCAGCGTCTCTAATGATAGCCTCGTAATTCAAGATTGTCTTAGTGAAAAGGTCCCAAACTTTTTGATGAATGCGTCCATGTTTGTTGGGAGCTACATAGTGGCTTTTGCATTATTGTGGAGATTGGCCATTGTGGGGTTCCCTTTTGTGGCCCTACTTGTGATCCCCGGTTTCATGTATGGGAGGACATTAATGGGGTTGGCTAGCAAGATAAGAGAAGAGTACAATAAAGCAGGCACAATAGCAGAACAAGCAATATCCTCCATCAGAACCGTTTATTCTTTTGTGGGGGAAAGCAAGACTATTGATGCTTTCTCTGAAGCCCTACAAGGGTCTGTTGAGTTGGGACTGAGACAAGGCTTAGCAAAAGGTTTAGCTATTGGAAGCAATGGTGTTGTCTTTGCTATATGGGCATTCATGTCCTATTATGGTAGCAGATTGGTCATGTACCATGGAGCTAAAGGTGGGACTGTATTTGCAGTTGGAGCAGCCATAGCTCTTGGAGGATTGGCACTAGGTGCTGGTTTGTCGAACGTGAAGTACTTCTCAGAAGCAAGTACCGCAGGAGAACGCATAATGGAAGTGATAAAAAGGGTTCCAAAGATTGATTCTGATAGCATGGCTGAGGAGATTCTGGAGAACGTTTCAGGGGAAGTTGAATTCAACCATGTGGACTTTGTGTACCCATCAAGGCCAGACAGTGTTATTCTGAATGATTTCTGCCTAAAGATTCCAGCAGGGAAAACAGTGGCTTTGGTTGGAGGGAGTGGCTCTGGAAAATCCACTGTGATATCACTTTTGCAGAGGTTTTATGACCCAATTGAGGGAGAGATATTTCTTGATGGTGTGGCCATTCACAAGTTGCAACTCAAGTGGTTGAGGTCTCAAATGGGTTTGGTCAGCCAAGAGCCTGCACTGTTTGCAACTAGCATTAAAGAGAATATACTTTTTGGAAGAGAAGATGCCACTCAAGAAGAGGTTGTGGAGGCAGCAAAAGCTTCCAATGCTCATAATTTCATTTCACAGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGAGGAGTTCAAATGTCAGGTGGACAAAAGCAAAGAATTGCAATAGCACGAGCAATAATAAAAAAGCCACGGATTCTTCTATTAGATGAAGCAACAAGTGCACTAGATTCTGAATCTGAACGAGTTGTGCAAGAAGCATTAGACAAAGCAGCAGTAGGGCGCACAACAATCATCATTGCACATAGATTATCCACCATAAGGAATGCAAATGTGATTGCTGTTGTGCAAAGTGGGAAAATCATGGAGATGGGATCACACCATGAACTAATCCAAAACGACAATGGCCTTTACACCTCACTAGTTCGTCTCCAACAAGCAAAAAATGAAAAAGAAGACACCATTTTTCATCCTACTCCTCCTTCGTCCATATCGAACAAAGACAATCACAACACGAGTAGCCGTAGGCTCTCTGTTGTGATGATCCGTTCTAGCTCCACCAACTCGATACCTCGTATTGGTGGTGGTGACGATAACAATATTGTTGAAGAAGTAGTGGAAGATAACAAGCCACCACTTCCCTCGTTTCGAAGGTTGCTCGCACTGAACATTCCCGAGTGGAAGCAAGCATGTTTAGGGTGTTTGAATGCGGTGTTGTTTGGTGCAATTCAGCCTGTGTATGCATTTGCAATGGGGTCAGTGATATCTGTTTACTTCCTCCCAGACCATAATGAGATAAAGAAGAAAACTATGATCTATTCACTTTGTTTCCTAGGGTTGGCTGTGTTCTCCTTAGTGGTTAATATCCTCCAGCATTACAACTTTGCTTACATAGGAGAGTACTTGACTAAAAGGATCAGAGAAAGAATGTTTTCCAAGATACTCACTTTTGAAGTTGGATGGTTTGATCAAGATGAAAATTCCACAGGTGCTGTTTGTTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGGTCTTTAGTGGGAGATAGAATGGCTCTAGTGGTACAAACCATTTCAGCAGTGGTAATAGCTTTTACAATGGGCCTAATCATTGCATGGAGGTTGGCCATTGTTATGATAGCAGTTCAACCCATTATCATAGCATGTTTCTACACAAGGCGTGTCCTTCTCAAGAGCATGTCTAGTAAGGCCATCAAGGCCCAAGATGAAAGTAGCAAGATAGCTGTTGAAGCTGTTTCCAACCTCAGAACAATCACAGCATTTTCTTCCCAAGATAGGATCCTTAAAATGCTCGAAAAGGCCCAAGAAGGCCCGAGCCGTGAAAGCATTCGACAATCATGGTTTGCGGGCATTGGGCTTGCATGTTCCCAAAGCCTTACATTTTGCACTTGGGCTTTGGACTTTTGGTATGGAGGCAAGCTTGTGTTTCAGGGCTTCATAAACGCCAAAGCATTGTTTGAGACCTTCATGATTTTAGTGAGCACAGGTAGGGTTATTGCAGATGCTGGTAGCATGACCAATGACCTAGCTAAAGGGGCTGATGCTGTGGGCTCAGTTTTTGCAATCTTAGATAGGTACACAAAAATTGAGCCAGATGATGACATAGATGGGTACAAGCCTGAAAAGCTAACAGGGAAAATAGAGCTTCATGATGTCCATTTTGCATACCCAGCTAGGCCCAATGTGATGATCTTCCAAGGCTTCTCAATCAAAATTGATGCAGGCAGATCAACAGCATTGGTTGGGCAAAGTGGCTCTGGAAAATCAACAATCATAGGCTTAATTGAGAGATTCTATGACCCTATGAAAGGGATTGTGACCATTGATGGTAGAGACATAAAATCATACCACCTTAGGTCACTAAGGAAGCATATTGCTCTTGTAAGCCAAGAGCCAACATTGTTTGGTGGGACCATAAGGGAAAATATTGCATATGGGGCATCTAATAATAATAACAAGGTTGATGAAACTGAGATCATAGAAGCAGCTAGGGCAGCTAATGCTCATGATTTCATTGCAAGCCTAAAGGATGGTTATGACACATCGTGTAGAGATAGAGGAGTGCAACTCTCTGGGGGTCAAAAGCAAAGAATTGCAATAGCTAGAGCCATATTGAAGAATCCAGAAGTGTTGTTGTTGGATGAAGCCACAAGTGCCCTAGATAGCCAATCAGAAAAATTGGTGCAAGATGCTCTAGAAAGGGTGATGGTGGGGAGAACTAGTGTGGTGGTGGCTCACAGGTTAAGCACAATACAAAATTGTGACCTAATTGCTGTGTTAGATAAGGGAAAAGTGGTGGAGAAAGGGACCCACTCATCTTTGTTGGCTCATGGACCAGGTGGAGCTTATTACTCTTTGATAAGTTTACAAAGAAGACCAGCAAATTAA 3771 0.4296 MSGDHNSSVSMVGKKKKNGSLRSIFMHADGLDWFLMIFGLFGAIGDGIGTPLVLFITSKIMNNIGGFSSNIGSTFIHSINENAVVLLYLAGGSFIACFLEGYCWTRTGERQAARMRVRYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDCLSEKVPNFLMNASMFVGSYIVAFALLWRLAIVGFPFVALLVIPGFMYGRTLMGLASKIREEYNKAGTIAEQAISSIRTVYSFVGESKTIDAFSEALQGSVELGLRQGLAKGLAIGSNGVVFAIWAFMSYYGSRLVMYHGAKGGTVFAVGAAIALGGLALGAGLSNVKYFSEASTAGERIMEVIKRVPKIDSDSMAEEILENVSGEVEFNHVDFVYPSRPDSVILNDFCLKIPAGKTVALVGGSGSGKSTVISLLQRFYDPIEGEIFLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATQEEVVEAAKASNAHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNANVIAVVQSGKIMEMGSHHELIQNDNGLYTSLVRLQQAKNEKEDTIFHPTPPSSISNKDNHNTSSRRLSVVMIRSSSTNSIPRIGGGDDNNIVEEVVEDNKPPLPSFRRLLALNIPEWKQACLGCLNAVLFGAIQPVYAFAMGSVISVYFLPDHNEIKKKTMIYSLCFLGLAVFSLVVNILQHYNFAYIGEYLTKRIRERMFSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLIIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDESSKIAVEAVSNLRTITAFSSQDRILKMLEKAQEGPSRESIRQSWFAGIGLACSQSLTFCTWALDFWYGGKLVFQGFINAKALFETFMILVSTGRVIADAGSMTNDLAKGADAVGSVFAILDRYTKIEPDDDIDGYKPEKLTGKIELHDVHFAYPARPNVMIFQGFSIKIDAGRSTALVGQSGSGKSTIIGLIERFYDPMKGIVTIDGRDIKSYHLRSLRKHIALVSQEPTLFGGTIRENIAYGASNNNNKVDETEIIEAARAANAHDFIASLKDGYDTSCRDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGKVVEKGTHSSLLAHGPGGAYYSLISLQRRPAN 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00142 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1248 IPR003439 GO:0005524
Gma19g00142 1256 SUPERFAMILY ABC transporter transmembrane region 26 345 IPR036640 GO:0005524|GO:0016021
Gma19g00142 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Gma19g00142 1256 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Gma19g00142 1256 CDD ABC_6TM_Pgp_ABCB1_D1_like 36 334 - -
Gma19g00142 1256 CDD ABC_MTABC3_MDL1_MDL2 1008 1251 - -
Gma19g00142 1256 Gene3D ABC transporter type 1, transmembrane domain 85 981 IPR036640 GO:0005524|GO:0016021
Gma19g00142 1256 Pfam ABC transporter 1027 1179 IPR003439 GO:0005524
Gma19g00142 1256 Pfam ABC transporter 379 528 IPR003439 GO:0005524
Gma19g00142 1256 Gene3D - 998 1255 IPR027417 -
Gma19g00142 1256 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 1253 IPR039421 -
Gma19g00142 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 691 972 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma19g00142 1256 Pfam ABC transporter transmembrane region 686 954 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma19g00142 1256 Pfam ABC transporter transmembrane region 36 303 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma19g00142 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1000 1251 IPR027417 -
Gma19g00142 1256 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 990 - -
Gma19g00142 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 599 IPR027417 -
Gma19g00142 1256 Gene3D - 359 624 IPR027417 -
Gma19g00142 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 37 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma19g00142 1256 ProSitePatterns ABC transporters family signature. 1151 1165 IPR017871 GO:0005524
Gma19g00142 1256 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 21 1253 - -
Gma19g00142 1256 SUPERFAMILY ABC transporter transmembrane region 665 992 IPR036640 GO:0005524|GO:0016021
Gma19g00142 1256 SMART AAA_5 1035 1231 IPR003593 -
Gma19g00142 1256 SMART AAA_5 388 560 IPR003593 -
Gma19g00142 1256 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00142 Gma-Chr19 1607127 1615757 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00142 20 1252 Calmodulin-binding Proteins AT2G36910 44.896 0.0 1074
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00142 K05658 - gmx:100807709 2402.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00142 19 1607127 1615757 Gma19g00142 19 1607127 1615757 ECH