Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00141 ATGAAGAGGGCGAGGGATGATATGTATCCTGCCTCTCAATTCAAACGCCCCTTTGCTTCGTCACGTGCTGATTCCTATGGACAAAACCAAGTCCCTGGAAGTGGAGGAGGAGGGGGAGGCGGCGGCGGAGGGGGAAGTGGCAATGGAGGTGGTGTTGGCGGGGGAGCAAATGCTTCCCAGAAGCTGACTACCaatgatgctttatcctatttgaaggaagtcaaagacatgtttcaggaccaaagagagaagtacgacatgtttcttgaggtcatgaaagatttcaaGGCCCAACGgactgacactgctggtgtcataaaaagggtgaaggagttattcaaggggcacaacaatttgatttttggatttaatactttcctaccaaagggttatgagataacgcttgacgaggatgaggctcctccaaagaaaactgttgaatttgaagaagcAATCAGCTTTGTGAACAAGATAAAGAAACGATTCCTAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAATATGTACCGCAAAGAGCATAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTTTTTAAGGACCATCGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATATTCGAAATTCATTGCAGCGCTTTAATGAGCGGGGTTCTATGGCCCCTATGATCCGCCAAATGCCAGCAGACAAGGCACAACGCTATCGACGAGACAGGCTTCCTTCTCATGATCGTGATATGAGTGCTGAACGCCCTGAGCTGGATGATGACAAGACAATGATGAACATACACAAGGAGCAGAGGAAGCGTGAAAGTAGGGAGAGGAGAATGCGTGATCAAGATGAGAGAGAACATGATCTTGATAACAACAGGGATTTGAACTTGCAACGCTTTCCTGACAAAAAAAAATCTGTCAAGAAAGCTGAAGGTTTTGGAATGGCTTCTGACTTTGCTTCTTATGAAGACAAAGATACCTTAAATAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGGGAAGTTGAGCAGTTCAGATGATTACCAAACATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCGGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCACTGTCTACTGATGCTCATTTATCAAGATCATCAAAGTTGGAGGAAAAAGACAAAGAGCACAAGCGTGATTTGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGTACTCCCAGCTACCGGCTTCTGCCTGCAGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTCTTGAATGACCATTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTATTGGAGTCTGTGAGCTCAGCTGCTAAAAAAGCAGAGGAATTGTATAATAGCATCAATGAAAATAAAATCAGTGTGGAGACTCTGAACCGTATTGAAGATCACTTTACTGTTCTAAATTTAAGGTGTATTGAACGTCTATATGGTGATCATGGTCTGGACGTTATAGACATCTTGCGTAAAAACCCAACCCATGCCCTGCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAAGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAGATTTATGCTAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTACTTCAAACAGCAAGATTCAAAGAACTTGAGCACCAAATCTTTGGTTACTGAGATTAAAGAAATTAAAGAAAAGCAGCAGAAAGAGGACGATATTATTCAGTCTATTGCAGCTGGAAATAAACAGCCTCTAATTCCACATCTGGAATTTGAATATTCTGATGTTGGGATTCATGAAGACCTGTATAAACTTGTTCGTTATTCATGTGAAGAGTTATTCTCTAGTAAAGAGTTGTTAAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAGCCTATGCTTGGTGTTCCTTCCCAATCTCATGGGACAGAAAGGGCTGAGGACAGAAAAACTGGACATAATGTTCGCAATTTTGGTGCACCAAATGTAGGGGGTGATGGAAGTCCCCGGGAAGATACTCTTTCGATAAATTCAAGGGTACCAAAATCTGATAAGAATGAAGCTGATGGTAGAGTAACTGAAGTGAAGAATGTTCACTGGACTACTGTGGCGGCATCCAATGATAAAGAAAATGGGTCTGTTGGTGGTGAAATTGTTAGTAGAGATGATCCATTAATGGATAAAGGACAGAAAAATGTAGAATGCAATGATAAAGCCTCTGGATTTAGCAAACAATTTGCCTCTGGTGAAGAAGGAGCTAAAAACAATGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACTAACTTAGATGCGTCTTCAGGCTGTGCTCTTACTCCATCGCAACCTACTGATGTTGATGACTCTGTATCCAAGTCTCAGGGTGTTAATGTACCTTCGGTGGAGGGATGCGACATGGCAACTCCAGTACCAGTGGTCAATGGTGTTCTAAGTGAGAGCAGTAAAGTTAAAACTCATGATGAATCAGCTGGGCCCTGCAAAATTGAAAAGGAAGAGGGTGAATTATCACCAATTGGTGACTCTGAGGAGGATAACTATGTTGCTTATGGAGATTCAAATGTGCAGTCAATGGCTAAGTCAAAGCACAACGTTGAAAAAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATCTTGTCCCGAGGCTGGAGGTGACAATGATGCAGATGCTGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTCCGTGAAGATCATGAAGAGGAGGAAGATATAGAACATGACGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATTTGTGATGCACAGGTCGGAGGAGATGGCACATCTTTGCCATTGTCAGAGAGGTTCCTTTCATCCGTGAAACCCCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGATTCAAGGGTGTTCTATGGAAATGATGACTTCTATGTGCTTTTTAGACTTCATCAAGCTCTTTATGAGAGGATCTTATCAGCAAAAACACATTCAATGAGTGCAGAAATGAAATGGAAAGCAAAAGATGCTAGTTCACCAGATCCTTATTCAAGATTTATGAATGCATTGTACAACTTGCTTGATGGATCTGCCGAAAATGCCAAGTTTGAAGATGAATGCCGAGCAATTATTGGGAACCAGTCGTATGTGTTATTCACATTGGACAAGTTAATATACAAATTGGTCAGACAGCTTCAAACTGTTGCAACCGATGAGGTAGACAATAAGCTTCTCCAATTATATGAATATGAAAAGTCTCGGAAGTCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCATGAGGATAATATATATCGTTTACAATGTTCCTCTACCCCCTCGCGACTATTCATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGTTGTTTGCTGTTTCTATTGATCCAAATTTCTCTTTTTATCTGCACAGTGATTTTCTGTCTGTCTTTCCTAACAAAAAGGAGCCCCATGGCATCATACTGCATAGAAACAAACGCCAATATGGAAACTTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAGTTAACGGATTGGAATGTAAGATAGCTTGCAGCTCATCCAAGATTTCATATGTTCTTGACACACAAGATTTTTTCTTCCGACCAAGAAAGAAACGACGGACGCCATCAGGGACCACAACCTCCCAGTCTCGTAGGGACAGAGAGGAAAGATTCCGCAAATTGTTGGCACACTCGCAATTTGTATCTTCATGA 4203 0.3881 MKRARDDMYPASQFKRPFASSRADSYGQNQVPGSGGGGGGGGGGGSGNGGGVGGGANASQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIKRVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFLSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYIRNSLQRFNERGSMAPMIRQMPADKAQRYRRDRLPSHDRDMSAERPELDDDKTMMNIHKEQRKRESRERRMRDQDEREHDLDNNRDLNLQRFPDKKKSVKKAEGFGMASDFASYEDKDTLNSMYSQAFSFCEKVKGKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLSRSSKLEEKDKEHKRDLDGAKEKERYREKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKKAEELYNSINENKISVETLNRIEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYSDVGIHEDLYKLVRYSCEELFSSKELLNKIMRLWSTFLEPMLGVPSQSHGTERAEDRKTGHNVRNFGAPNVGGDGSPREDTLSINSRVPKSDKNEADGRVTEVKNVHWTTVAASNDKENGSVGGEIVSRDDPLMDKGQKNVECNDKASGFSKQFASGEEGAKNNVSIAIRGENSLNRTNLDASSGCALTPSQPTDVDDSVSKSQGVNVPSVEGCDMATPVPVVNGVLSESSKVKTHDESAGPCKIEKEEGELSPIGDSEEDNYVAYGDSNVQSMAKSKHNVEKRKYQSRNGEDESCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEHDDVDGKAESEGEAEGICDAQVGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQALYERILSAKTHSMSAEMKWKAKDASSPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDNKLLQLYEYEKSRKSGKLNDSVYHANAHVILHEDNIYRLQCSSTPSRLFIQLMDNMNEKPELFAVSIDPNFSFYLHSDFLSVFPNKKEPHGIILHRNKRQYGNLDELSAICSAMEGVKVVNGLECKIACSSSKISYVLDTQDFFFRPRKKRRTPSGTTTSQSRRDREERFRKLLAHSQFVSS 1400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00141 1400 Coils Coil 439 459 - -
Gma19g00141 1400 MobiDBLite consensus disorder prediction 437 455 - -
Gma19g00141 1400 Pfam Paired amphipathic helix repeat 83 127 IPR003822 GO:0006355
Gma19g00141 1400 Pfam Paired amphipathic helix repeat 167 211 IPR003822 GO:0006355
Gma19g00141 1400 Pfam Paired amphipathic helix repeat 367 411 IPR003822 GO:0006355
Gma19g00141 1400 MobiDBLite consensus disorder prediction 941 962 - -
Gma19g00141 1400 MobiDBLite consensus disorder prediction 1043 1058 - -
Gma19g00141 1400 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1382 - -
Gma19g00141 1400 MobiDBLite consensus disorder prediction 987 1006 - -
Gma19g00141 1400 MobiDBLite consensus disorder prediction 938 1067 - -
Gma19g00141 1400 MobiDBLite consensus disorder prediction 237 316 - -
Gma19g00141 1400 SMART hdac_interact2seq4b 478 578 IPR013194 -
Gma19g00141 1400 Pfam Sin3 family co-repressor 480 572 IPR013194 -
Gma19g00141 1400 ProSiteProfiles PAH domain profile. 60 130 IPR003822 GO:0006355
Gma19g00141 1400 PANTHER SIN3B-RELATED 1 1382 IPR039774 GO:0003714
Gma19g00141 1400 Coils Coil 551 571 - -
Gma19g00141 1400 MobiDBLite consensus disorder prediction 18 32 - -
Gma19g00141 1400 Gene3D Paired amphipathic helix 343 416 IPR036600 GO:0006355
Gma19g00141 1400 SUPERFAMILY PAH2 domain 58 129 IPR036600 GO:0006355
Gma19g00141 1400 Gene3D Paired amphipathic helix 143 215 IPR036600 GO:0006355
Gma19g00141 1400 ProSiteProfiles PAH domain profile. 144 214 IPR003822 GO:0006355
Gma19g00141 1400 MobiDBLite consensus disorder prediction 755 808 - -
Gma19g00141 1400 Gene3D Paired amphipathic helix 66 128 IPR036600 GO:0006355
Gma19g00141 1400 ProSiteProfiles PAH domain profile. 345 414 IPR003822 GO:0006355
Gma19g00141 1400 Pfam C-terminal domain of Sin3a protein 1115 1362 IPR031693 -
Gma19g00141 1400 MobiDBLite consensus disorder prediction 249 316 - -
Gma19g00141 1400 MobiDBLite consensus disorder prediction 825 845 - -
Gma19g00141 1400 SUPERFAMILY PAH2 domain 141 213 IPR036600 GO:0006355
Gma19g00141 1400 SUPERFAMILY PAH2 domain 348 414 IPR036600 GO:0006355
Gma19g00141 1400 MobiDBLite consensus disorder prediction 1 58 - -
Gma19g00141 1400 MobiDBLite consensus disorder prediction 1007 1027 - -
Gma19g00141 1400 MobiDBLite consensus disorder prediction 436 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00141 Gma-Chr19 1586921 1596605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00141 45 141 WRKY Transcription Factor Family AT4G12020 57.143 2.34e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma19g00141 Sin3a_C 7.6e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00141 K11644 - gmx:100807181 2676.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00509 13 17530423 17540549 Gma19g00141 19 1586921 1596605 GST