Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00122 ATGGAGATTCAACAAAGCTTGAAGCTCACAATCCACAAGAAATGGCCATCATCACCCAAAAAACCACCTAAAGAAACAGAACCAATAACCACCACCCCAACTACTCCAAAGCTGAAATGGAAGAAAATCTTCTTCCAAACCAAAACCAAAACCCAAACTCAAACACCCCCAGAAGAATTCCTCTGCCCTATTTCTCATTCCCTCATGTTCGACCCAGTCATCGTCTCCTCCGGCCACTCCTTCGAACGCTCCTCCGTGGAAGCCTGCATAAATGTCAATTTTACCCCTCAACTCCCCGACGGCACCACCCCCGATTTCTCCACCCTCATCCCCAACCTCGCCCTCAAATCCGCCATCCTCAAATGGTGCCAATCCACCCACACACCACCCCCTCCACACCCCAACAACAACAACAACCAcctcgtacaaaccttaatctcctcgaacccaagcctcgtacccaccttaaaccccccgaacccaagcctggtacACACGAACCCCACCCCAGAGAAAATCTCCGACCAAGATTTGATTTTGAATTCTCTGAACGAAAACCCACCACTGACGAACCTCCGCCACCACGCGGAAACCGAGGTTCCGATAAGACGGACACATTTGTACACAAGTTCCGATGAATCCATAGCGACAACGTCAGCCTCAACGCCGCCACTTCAACTCTCCACGCGCCCAAGCTGCTGCTACTACTCTTCACCTTCGTCTTCAGAACTCGAACCCGCCACAACCCCAGAAGAAGAAGAAATCATGACAAAGCTCAAAAACCCTCAACACAGTATAATCGAAGAAGCGCTTATCTCTCTCAGAAAACTAACGAGAATAAGAGAAGAAACAAGGCTTCAACTTTGCACTCCTCGGTTACTCTCCGCGTTACGTTCCCTCGTTTTGTCGAAGCACGTGAACGTTCAGGTGAACGCTCTTGCATCGGTGGTGAACCTATCGTTGGAGAAAAGTAATAAGGTGAGGATCGTGCGGTCGGGGATGGTTCCGCCGTTGATCGAGGTTTTGAAGTTTGGATCCTCTGAGGCGCAGGAGCACGGTGCGGGCGCGCTGTTTAGTTTGGCAATGGATGATGATAACAAAACCGCGATTGGGGTTTTGGGTGGTTTGGCTCCGTTGCTTCACATGCTCCGATCCGAGAGCGAGCGGACTCGGCATGACTCGGCTTTGGCGCTTTATCATTTGTCTTTGGTTCAGAGTAACCGGTCCAAGATGGTTAAACTCGGTTCGGTTCCGGTTCTTTTGAGCATGGTTAAATCGGGTCATATGATGGGTCGGGTTATGTTGATATTGGGGAATTTGGGTTCCGGGTCGGACGGCCGGGCCGCAATGTTGGATGCGGGTGTGGTGGAGTGTTTAGTGGGGTTGCTCAGTGGGCCCGAACCGGGGACCGGGTCAACTCGGGAGAGTTGTGTGGCAGTGATGTATGCACTGAGTCACGGCGGGTTGAGGTTTAAGGCGGTGGCGAAGGCGGCCGGGGTGGTGGAGGTGTTGCAAAAGGTGGAGAAGATGGGGAGTGAGAGGGCCAGGCGGAAGGTGAGGAAGATATTGGAGATAATGAGGACAAAGGAGGTGGAGGAGGAGGATGTGGATTGGGAGGAGTTGCTAGACTCGGGGTTGGGTTGCCGGACTCGGAGTAGACTCGGTGGTGGGTTGGATGAGTCAAGTGCAAACTCGGCCGAGTTTTGA 1707 0.4997 MEIQQSLKLTIHKKWPSSPKKPPKETEPITTTPTTPKLKWKKIFFQTKTKTQTQTPPEEFLCPISHSLMFDPVIVSSGHSFERSSVEACINVNFTPQLPDGTTPDFSTLIPNLALKSAILKWCQSTHTPPPPHPNNNNNHLVQTLISSNPSLVPTLNPPNPSLVHTNPTPEKISDQDLILNSLNENPPLTNLRHHAETEVPIRRTHLYTSSDESIATTSASTPPLQLSTRPSCCYYSSPSSSELEPATTPEEEEIMTKLKNPQHSIIEEALISLRKLTRIREETRLQLCTPRLLSALRSLVLSKHVNVQVNALASVVNLSLEKSNKVRIVRSGMVPPLIEVLKFGSSEAQEHGAGALFSLAMDDDNKTAIGVLGGLAPLLHMLRSESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLSMVKSGHMMGRVMLILGNLGSGSDGRAAMLDAGVVECLVGLLSGPEPGTGSTRESCVAVMYALSHGGLRFKAVAKAAGVVEVLQKVEKMGSERARRKVRKILEIMRTKEVEEEDVDWEELLDSGLGCRTRSRLGGGLDESSANSAEF 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00122 568 Pfam U-box domain 57 125 IPR003613 GO:0004842|GO:0016567
Gma19g00122 568 SUPERFAMILY ARM repeat 257 523 IPR016024 -
Gma19g00122 568 Pfam Armadillo/beta-catenin-like repeat 363 402 IPR000225 GO:0005515
Gma19g00122 568 MobiDBLite consensus disorder prediction 1 33 - -
Gma19g00122 568 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 37 557 - -
Gma19g00122 568 Gene3D - 248 525 IPR011989 -
Gma19g00122 568 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 333 375 IPR000225 GO:0005515
Gma19g00122 568 PANTHER U BOX DOMAIN-CONTAINING 37 557 - -
Gma19g00122 568 SMART Ubox_2 59 122 IPR003613 GO:0004842|GO:0016567
Gma19g00122 568 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 130 IPR013083 -
Gma19g00122 568 SUPERFAMILY RING/U-box 50 128 - -
Gma19g00122 568 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842|GO:0016567
Gma19g00122 568 SMART arm_5 322 362 IPR000225 GO:0005515
Gma19g00122 568 SMART arm_5 281 321 IPR000225 GO:0005515
Gma19g00122 568 SMART arm_5 363 403 IPR000225 GO:0005515
Gma19g00122 568 SMART arm_5 443 486 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00122 Gma-Chr19 1267920 1269695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00122 49 568 U-box Gene Family AT5G40140 55.009 5.73e-175 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00122 - - gmx:100798675 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g00122 19 1267920 1269695 Gma19g00122 19 1267920 1269695 ECH
Gma13g00521 13 17685023 17686911 Gma19g00122 19 1267920 1269695 GST
Gma19g00122 19 1267920 1269695 Gma18g02325 18 57069276 57075778 PCT
Gma19g00122 19 1267920 1269695 Gma09g02216 09 47683383 47688289 PCT